NONHSAT010656
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010656 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3265 nt |
Genomic location |
chr1-:245003545..245012214 |
Exon number |
4 |
Exons |
245003545..245006483,245008549..245008646,245009906..245010008,245012090..245012214 |
Genome context |
|
Sequence |
000001 CTTGAAAAGT AAAGCAAACA AATGTGTTGA TTTACATTTC ATCTCCTTTT CCTTAGTCTG TCCATGTGAA TGTGCTGTGT 000080
000081 GGAAGAGTTA AAGGGCCCAA CTAAATGTTC CAGTGATTCC AATAGCTATT TAGCTGGTAC CTACTGCTAT ATCACCTAGT 000160 000161 GTGACATTTC GGAATTAATG GAACAATGAA GGAAGCTGTA CACTGGAGGT TCCAGGTGGT CATGGAAGGT TTCCAGTTTA 000240 000241 TGCAAACTTC TGTGAAAATG AGCTTTGTTA TTGGTGAAGA CATTGGAAAT TTTACCAGCC AAAACAGAGT TTCTCTCTTA 000320 000321 TTCAGGATTG TTCAATTGCT GCTGCTGCCG TTGTGTTTTC TTTCAGGATC GAGGTGGGTA CCTTCATATA ATATCTTCTT 000400 000401 TTTAATTTCT TCTCTGGCAA TTCTTTCCTG GATTCTTTGC TTTGCATAAT TATACCTACA ATGAAACCTT AGAAGAAAAG 000480 000481 AATATGAATA AATTGTTAAT ATAAAGTCCT ACAGAAATTA ATTTATGAAA TTTCTCTAAA TCACACAAAA CTTAAATACA 000560 000561 GATGACTACT ACCCTGAGAC TGAAAAATAT GTTCTAATTT ATAGTGCTAT TTTTGGGCAG TTTTGGTGTC AGAATACCTA 000640 000641 TCAACACATT CTTTTTTTAT TAGGAAAAAA AGGATGTCTA CATAACAATT TGTAAAGTGA TAAAATCCAT TAGTTTTTAA 000720 000721 GTCTTCTGAT AGCATTGGCT ATTATAAGAA ACAAGTATTT GCTCTCGTTT TTAACGGGAT AATAATGCTA TGTCTACATA 000800 000801 AAAtgatttc taccacctta aatagctcac tgtagaaatt catgtataaa tggaaccata tagtacatac atatcatact 000880 000881 cttaggtctg gcaaatattt gaggttcatc catattttat attcactcat cagtagttGT AAACACATTC TTAAAGTAGC 000960 000961 ATTTTCAGAT ATGAATAAGC AGGGATGAAA TAAGTATTAG GGTAAGGGAA ATGGTTGAGG CTTTCCTAAG TGAAGTGTAA 001040 001041 AAACCACAGC TTTCTTTTTA ATGGGATGTC TAATATGCAT TTATCTGTTC AAGCATTTTA AGATTTCCAT GAAAATGTCC 001120 001121 TGAAAAATCA AGATTCTTCA TTGAGGGTGA GGATCTCCCA ATGGGAGACT GCTCTGAAAA GAGCATGTGC TTTTTGAATT 001200 001201 AGATAACCTA CTATAATCAT GGATGTTCTT GAATACTTAG CAAACATACC AGCATCCCAA AGTCACCAAG ATAAACCCTC 001280 001281 CTACTCCAAC ATCACATGAT CTTCTAATTC TACCTGTAAA AATAAGCATA ACAATTAATT AGAATATAAT TACGTTATAT 001360 001361 ACATTACTCC ACCTAGAAAA AAAAATAGTT CATTATGTAG AGAAATGCTT TTTTTAGTAC ATAGAGAAAT AAAAAATACA 001440 001441 GATACTCACT AGTGAACAAA AAATGTCCAA AGCCAGCCAC AACAGATCCT AATGAACCAT ACAATATTGA ATGCCGGGCG 001520 001521 CAGGGAGTAT TTTCAACATC TAAAAATCCT AGGAGCTTAA GGGACTAGAA TGAAAAAAAA GAACCTAGAT TGAGTAAGAA 001600 001601 AGTATTTCAT TTTGGGGTGC TTTGGCAAAA ATGACAATAC ACCATTTCTT TTCTTGTAGT TGAGGGTTTA AACTAGAGTA 001680 001681 TGTGCCACGT GACAACCTAA ATCAGCTTGC GTTGTCTTTG TCCACCTTTG GTATGCAGTC TGAATCTTTA AATCCGAAAA 001760 001761 CCTTACAAAT TGGACCGGAA AACCCTTAAG CAGTAGGGTA ACTTGGAGCT GTATCTTAAT TTGCTAATCA ACTGACTTGG 001840 001841 AAATAGGATA ATTCATTTTA TGAGCTCTTT AAATGAGTTT ATTTGGGAAT ATGCCTATCA TTGGAATTGA AAGCAGCATA 001920 001921 GCTTGCTTCA GTAACTCCAA TAATTTGGGA AGCAGAAATG GAAAAAGTAA TTTGAGTCAT GTTTGCTTAT GTAGTGCCGT 002000 002001 TTAAAATTCC CCTAGTAATT ACCTTTCATA TTTTATTAAC TAGGTTAACA TCAACTGTGG TTGTAAGAGT AAATGTTTCA 002080 002081 CCTTAAGATA AACATGGGCA ATATATTAAA CTCTAGTCTG TTTTCTTGCC TGTGAAGTGA GGCTGCACTT GATTATATTT 002160 002161 GATTCTTTGT TCGTAATACA TGGGAACGAC AGCTAAGTGT GGTGAAAAAC GCGGGGATCC AAAGAGCTGG ATTTTTATCT 002240 002241 CAGATCTGCC GCTAACTTTT GTATCCTATA GGCTACTTTT ATTTCTATGG TCTCAATCTA TAACATGAAT GGGTTGGGTT 002320 002321 AAATGACTGA AGTTCCTTCA AGTGCTAAAA TTCTTTTTCT ACAGTCTTCA TTGGATTTAT GTATTTCTTA TTCCTAATAT 002400 002401 GTTTAACTGG GATGTCTGTC ACTCTAGGGC GGCAAGACAG ACATTTAAAA GTAACAGTCA CACTGCTGAA CTGGCATTTC 002480 002481 TGTTAACACA AAAGTTTAGA AAACTCACGG TAACTGTTAC TTGATTTAAG TGTATATAAA ATTTTCAGTA AGGCTGCTTT 002560 002561 TAAAAGGAAC CACTGTCCAT TTAAAGGTTT CATAGTTATC TTCAATGGGT TAGTATTGTT TGGGGCAGGA CATTAAACTA 002640 002641 GAAGGGATTC TATAGGATGA GGTGATACCT AGAAGGTAAT ATATTGTAAG GCAAAAGAGA TTAGAAGAAA TGGGGAAAGG 002720 002721 ATAGTAAAAG GCAAGTCAGA TTAAAGGTTG AAACATGAAG ATATTCTCAA TTGTATTTCT GCCTATGTTT GCTTTTTTGG 002800 002801 CTCAAGCATC TGTTGGAAGA GACAAAATGT GACTTGGTTC ATAATAAAGC AAGAATTATT TACTCTCGGA TCATTCTATT 002880 002881 CCATTTTTTC CCTCTGTCTG GCCCCGTTCC CACCCGCATG CCTAACATAG GATTGCTTCA AAGCTTTGCA GTACAGTTCT 002960 002961 TCACATTACC AAGAGGTTGG GGGATTTCAT TTAGCAAGAC GACTTTTTCC TATCAGCTTG AGAGCCCAGG GGACATATGA 003040 003041 TCATGTGGGT AGTGTTATGC AGGTGAGGAA TGCTGGACTT AGCGCTCCAG TCCAGGACTA CCTCTAAACT AGACTATTTC 003120 003121 CCCAAGGATG GGATGCTGGG GCCAGAGGAT TAGTACCAGT TTGATCTAGT CTTAGGTGCA AAGATGCAAG TGTGAGACCA 003200 003201 GCTTGTACCA CAGGATAGAA TTAAGTATTT TCTAGTCCCA CTCTCAGATT CTGATTTACA ATCAC |
Predicted Small Protein
Name | NONHSAT010656_smProtein_185:448 |
Length | 88 |
Molecular weight | 10097.9284 |
Aromaticity | 0.16091954023 |
Instability index | 41.4574712644 |
Isoelectric point | 8.84063720703 |
Runs | 13 |
Runs residual | 0.0111658456486 |
Runs probability | 0.0270474094004 |
Amino acid sequence | MKEAVHWRFQVVMEGFQFMQTSVKMSFVIGEDIGNFTSQNRVSLLFRIVQLLLLPLCFLS GSRWVPSYNIFFLISSLAILSWILCFA |
Secondary structure | LLHHHEEEHHHHHHHHHHHLLLEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHLLHHHLL LLLLLLHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHH HHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTT TTTTTTTTTTTTTTTTTTTTTiiiiii |