NONHSAT010731

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT010731

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3185 nt

Genomic location

chr1+:246939778..246955765

Exon number

5

Exons

246939778..246940404,246943686..246943885,246944781..246944929,246952810..246953000,246953748..246955765

Genome context

Sequence
000001 TACACATCCC AAATGTAGGA GTCTAGGGAT AAGCTAAACA GCCAAGACTG GAGCAGTCTC TCACCTTGAC CAGAAGCAGT 000080
000081 TTTCGCAAGT GATGCTTTGA GAAGCACGTT CTCCTCTCTC AGGGCTCTGT TAATGTTCCT GAGCGGTTCC GTCTCCTGCT 000160
000161 CTAGCTTGAG CAGCTTCAGA TAAAGTTCTG GTATCTGGTT TGATGCTGCC TACCAGAAAA CATGTCAGTT TCGTCTTTTG 000240
000241 TTGTATCATC TGCATATCCT TTGAGACTGG CAATGTTTGC TACCATGGGA AAATCAAATG GGATGGGAGT GTGTGTATGG 000320
000321 TGAGCAGAGT TTAAGCCCCT CAGGGTACAC AGGAGTAAAT AAAGAAAACG TTTGTTAAGG GGGAAGGAAC GTCAAGCAGC 000400
000401 CGTCCTCAGA GATTTTCTAG CCACCTGGGA TGCCCACTTT AGTGTCCTAT GTACACACCT GGCTTATATC CTTCACAGTG 000480
000481 GAAATTTTCT TGGTGTCTAC CAGGATGTGG CCTTCACCTG TGACCATGAG GCCCAGCTGA GAGCAGCTCA GCTCGGTGCA 000560
000561 GCCTTCTGTA ATGGGGAGAG ACACAGTCAA AGAAAGAAAC ATCCCAGTCG CCCAGCTCCA GTGTCAGCTT CATGCAGTAG 000640
000641 GCCAGCGACT GGAGCCAGAT GTGAGCTGAG CCCAAGCGGA CGACCTCGAC AGGATCCCAG AAAGGGTCGT CATCTCGAGC 000720
000721 CACAGGGCCG TGATCTCCAT CTAGAAAGCG CTGGTAAAGT TCCTGCATTA GGAATTTCCT ATTGATGAAC TTGGCTTTTG 000800
000801 ACCATATCCA CACCTGGAAA CACAGAGGGG TCCACACCCA GTGCACAGCA GATCCAGGAC AACAGCCTGC CGCTGTCTTC 000880
000881 CTCCTCACTG GGTGAGGACA GGGCCTCTGT CAGCACTGGC TCTGGAGAGG AAACAAACCT GAAGCCACAG GAGGAGGGAT 000960
000961 TCCAGAGGGA TTCCAGGAAA GCAGAGAGAC ACAGTGTGAA ATCGCTGCTC TCAGATCAGC ACACGGGAGA GGCCAGCAGT 001040
001041 CAGGAGGGGG CTCACCGAGT TTGTCTGCAC TCGCTCCCTC CGCAGCCGCC CTCTCCAGCT GGAAGAAGTC GTAATCGAAC 001120
001121 CTGCTCAGGT CCTCACTGCC CCACTCCGAA GGAAACCCCA CGTACAGgtg aGGTcagagg agtgaagtga cttgcccaag 001200
001201 accacacagt gagtcaggag caggcctgTC CCTCCAGCAG TGGTGCCATG TTGTCCCCAA GCCATGGTGG CAGAGGAGCT 001280
001281 GGTGTGAACG CCCCATCCTG CCACGTCTGT GATGTGGGCA CCTCACATGA CTGTCCCCTC CCAGCTCTTG GGGGGGACCT 001360
001361 AGGACATTCT GTGAGCCTGC AGGAAAGTTT ACCAAATGCT GCAGCTTTGT CCTGGTGGTG ATGGGCACCC CGTTAACGGC 001440
001441 AACCTTGCAT TTGCTATGTG GAGTGACCGT CACTTTACCG TCGGCATTTG TGAAGGAAGC GTGTTTATCT GAAATTCTAA 001520
001521 GAAGATGAGA GTCAAAGACA CCCAGCAAAC GGCGGTTTCC GTGAGCAGGT AGGCTGACCT TTCTCATGTG CACAGGAGGG 001600
001601 AAGGTCTACA GCTGCGGAGG ATGGCAGGTG GCATCTCGGG GCCTCCTGTG TGCTGTGGCC CATGATGCAT GGGGACAGCA 001680
001681 GCGGGCGCAG AAGGACCCTG CCCTTGGGGA GCACGGGGAG CTGGGAGACA GCAGGCAAGG GCTTCATTAA CAGAACGAAC 001760
001761 ACCAGCTGAG GGCCTAGCAC TGCGGGGAGC CGGCCAAGGC CACACTGGAG TCCTCCCGCT CCCAGGCCAG CGGGATGGGG 001840
001841 TGGTGGGAAG ATGGCAGCAA GCAAGCTTCA GAAGAGACGC TCAGGAGGCG ACTCTTAACG AGCCTCACCT ACTCCGGGTA 001920
001921 CGTTTTGATC TGTTTCTGCG CCCTCGCCGT ATAAATTCAG ACCTTATAGG ATTTGGGGCT GGACGTCGGG GTGTCAGGTT 002000
002001 GGCATCCCCT CTCCCCGCCC TGCTCCCCTG CACCGATGTC ATCTGTGTGT CCTGAATGAC TGGCTCCCTG CCTTAGCATG 002080
002081 TTCCATGTTC CTGCACTCCT TGGCCATCAT GGAATGTTCT GGATGTGGAG ACCCGTGTGC ATCCAAACCC TTTTTTGCAT 002160
002161 GGGGCCCAGG GATCCTGTGG GAAAGGTTGC GGCCTCATCA CTGGAGTTCA GACATTTACG CACCTGTGCG TTGGACTAAG 002240
002241 GACGTGTTCT GGAAAGGGAC TTGAGGGGGA TCCCCAGGAA GATGTCCCAA GAAGGAGGCT GGCAGTGCAG GACGAGGCGG 002320
002321 GGCCAGCCGG CCCCTGGGTC AGCACCCCTC CAGCCACGAC GGCCCGTGGG CTTTCGTACG GGGGCAGGGG GTGATCTGTC 002400
002401 TGAAGGATGT AGGTGATGGT GCTTCCCAGC TGGAGAGCTG GAAGCAGGAG GAGGACACTC CAGCAGCAGC CTCCCAGGCA 002480
002481 GGGCAGCCAC AGAGCTGGGG ACAGCTCTTG ACTGGGTGAG GCCCGGCATG GGGTTTCCCA GGGCTCCTGC GGGGCCTCCT 002560
002561 GAGGGAGCCC TTGGGGTCAC TCCACAGTCT GGGCTTTCTG TAGTCCGGTG GGTCAGGGCT CCAAGCACCA GGAGAGATCC 002640
002641 AGGGATGCGC TTATGTTTGG GCCACCCCCG GTGGGCTTGT TCGTTCAGCC CCCTTCGTTT CCTGGCCTGC TCTACTTATA 002720
002721 TCTgtttgtg aagaattatt acacagaatc tagaaaccag ctttcccttt tctccCAGGG TTGGAGCCCA GGAAGCAAAC 002800
002801 CAGCACTGCA CCCTAGATTT CAGCCAGAGG ACGAAAGCCC TGCCCTCAGC TTTCTCAGAC CAGCCCTGGA GTAGGTGGCC 002880
002881 CGGGGAGACC TGGGCAGTGT CCCTGCTTGT CCTGCAGACT GTGTGGCTCT GCAGACCTCT AGATGGAGGA GGCACAATTC 002960
002961 TCTAATGCTG GACGAGGACA CTGATCATGG AAACTCACCC CAAACCTTGA ATCGTGATAG CATTTGAGGC AGCCTGACCG 003040
003041 GTGCCACATG AACCTGAAAG GAATCAAGAT ATAATTTATT TTGAAAATAA ATCAGACACT TTCAGAATTT GAGCGTAAGA 003120
003121 AGTTAACATG TCTGATGCGT TGGAAGTGAC GTTTTCTCTA CAGTGGGATG GTACTGAAGG GATTT
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Predicted Small Protein

Name NONHSAT010731_smProtein_2084:2263
Length 60
Molecular weight 6823.8396
Aromaticity 0.169491525424
Instability index 46.1983050847
Isoelectric point 7.77520751953
Runs 9
Runs residual 0.0080858342404
Runs probability 0.0338475730634
Amino acid sequence MFLHSLAIMECSGCGDPCASKPFFAWGPGILWERLRPHHWSSDIYAPVRWTKDVFWKGT
Secondary structure LLHHHHEEEEELLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLHHHHHEELLL
PRMN -
PiMo -