NONHSAT010731
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT010731 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3185 nt |
Genomic location |
chr1+:246939778..246955765 |
Exon number |
5 |
Exons |
246939778..246940404,246943686..246943885,246944781..246944929,246952810..246953000,246953748..246955765 |
Genome context |
|
Sequence |
000001 TACACATCCC AAATGTAGGA GTCTAGGGAT AAGCTAAACA GCCAAGACTG GAGCAGTCTC TCACCTTGAC CAGAAGCAGT 000080
000081 TTTCGCAAGT GATGCTTTGA GAAGCACGTT CTCCTCTCTC AGGGCTCTGT TAATGTTCCT GAGCGGTTCC GTCTCCTGCT 000160 000161 CTAGCTTGAG CAGCTTCAGA TAAAGTTCTG GTATCTGGTT TGATGCTGCC TACCAGAAAA CATGTCAGTT TCGTCTTTTG 000240 000241 TTGTATCATC TGCATATCCT TTGAGACTGG CAATGTTTGC TACCATGGGA AAATCAAATG GGATGGGAGT GTGTGTATGG 000320 000321 TGAGCAGAGT TTAAGCCCCT CAGGGTACAC AGGAGTAAAT AAAGAAAACG TTTGTTAAGG GGGAAGGAAC GTCAAGCAGC 000400 000401 CGTCCTCAGA GATTTTCTAG CCACCTGGGA TGCCCACTTT AGTGTCCTAT GTACACACCT GGCTTATATC CTTCACAGTG 000480 000481 GAAATTTTCT TGGTGTCTAC CAGGATGTGG CCTTCACCTG TGACCATGAG GCCCAGCTGA GAGCAGCTCA GCTCGGTGCA 000560 000561 GCCTTCTGTA ATGGGGAGAG ACACAGTCAA AGAAAGAAAC ATCCCAGTCG CCCAGCTCCA GTGTCAGCTT CATGCAGTAG 000640 000641 GCCAGCGACT GGAGCCAGAT GTGAGCTGAG CCCAAGCGGA CGACCTCGAC AGGATCCCAG AAAGGGTCGT CATCTCGAGC 000720 000721 CACAGGGCCG TGATCTCCAT CTAGAAAGCG CTGGTAAAGT TCCTGCATTA GGAATTTCCT ATTGATGAAC TTGGCTTTTG 000800 000801 ACCATATCCA CACCTGGAAA CACAGAGGGG TCCACACCCA GTGCACAGCA GATCCAGGAC AACAGCCTGC CGCTGTCTTC 000880 000881 CTCCTCACTG GGTGAGGACA GGGCCTCTGT CAGCACTGGC TCTGGAGAGG AAACAAACCT GAAGCCACAG GAGGAGGGAT 000960 000961 TCCAGAGGGA TTCCAGGAAA GCAGAGAGAC ACAGTGTGAA ATCGCTGCTC TCAGATCAGC ACACGGGAGA GGCCAGCAGT 001040 001041 CAGGAGGGGG CTCACCGAGT TTGTCTGCAC TCGCTCCCTC CGCAGCCGCC CTCTCCAGCT GGAAGAAGTC GTAATCGAAC 001120 001121 CTGCTCAGGT CCTCACTGCC CCACTCCGAA GGAAACCCCA CGTACAGgtg aGGTcagagg agtgaagtga cttgcccaag 001200 001201 accacacagt gagtcaggag caggcctgTC CCTCCAGCAG TGGTGCCATG TTGTCCCCAA GCCATGGTGG CAGAGGAGCT 001280 001281 GGTGTGAACG CCCCATCCTG CCACGTCTGT GATGTGGGCA CCTCACATGA CTGTCCCCTC CCAGCTCTTG GGGGGGACCT 001360 001361 AGGACATTCT GTGAGCCTGC AGGAAAGTTT ACCAAATGCT GCAGCTTTGT CCTGGTGGTG ATGGGCACCC CGTTAACGGC 001440 001441 AACCTTGCAT TTGCTATGTG GAGTGACCGT CACTTTACCG TCGGCATTTG TGAAGGAAGC GTGTTTATCT GAAATTCTAA 001520 001521 GAAGATGAGA GTCAAAGACA CCCAGCAAAC GGCGGTTTCC GTGAGCAGGT AGGCTGACCT TTCTCATGTG CACAGGAGGG 001600 001601 AAGGTCTACA GCTGCGGAGG ATGGCAGGTG GCATCTCGGG GCCTCCTGTG TGCTGTGGCC CATGATGCAT GGGGACAGCA 001680 001681 GCGGGCGCAG AAGGACCCTG CCCTTGGGGA GCACGGGGAG CTGGGAGACA GCAGGCAAGG GCTTCATTAA CAGAACGAAC 001760 001761 ACCAGCTGAG GGCCTAGCAC TGCGGGGAGC CGGCCAAGGC CACACTGGAG TCCTCCCGCT CCCAGGCCAG CGGGATGGGG 001840 001841 TGGTGGGAAG ATGGCAGCAA GCAAGCTTCA GAAGAGACGC TCAGGAGGCG ACTCTTAACG AGCCTCACCT ACTCCGGGTA 001920 001921 CGTTTTGATC TGTTTCTGCG CCCTCGCCGT ATAAATTCAG ACCTTATAGG ATTTGGGGCT GGACGTCGGG GTGTCAGGTT 002000 002001 GGCATCCCCT CTCCCCGCCC TGCTCCCCTG CACCGATGTC ATCTGTGTGT CCTGAATGAC TGGCTCCCTG CCTTAGCATG 002080 002081 TTCCATGTTC CTGCACTCCT TGGCCATCAT GGAATGTTCT GGATGTGGAG ACCCGTGTGC ATCCAAACCC TTTTTTGCAT 002160 002161 GGGGCCCAGG GATCCTGTGG GAAAGGTTGC GGCCTCATCA CTGGAGTTCA GACATTTACG CACCTGTGCG TTGGACTAAG 002240 002241 GACGTGTTCT GGAAAGGGAC TTGAGGGGGA TCCCCAGGAA GATGTCCCAA GAAGGAGGCT GGCAGTGCAG GACGAGGCGG 002320 002321 GGCCAGCCGG CCCCTGGGTC AGCACCCCTC CAGCCACGAC GGCCCGTGGG CTTTCGTACG GGGGCAGGGG GTGATCTGTC 002400 002401 TGAAGGATGT AGGTGATGGT GCTTCCCAGC TGGAGAGCTG GAAGCAGGAG GAGGACACTC CAGCAGCAGC CTCCCAGGCA 002480 002481 GGGCAGCCAC AGAGCTGGGG ACAGCTCTTG ACTGGGTGAG GCCCGGCATG GGGTTTCCCA GGGCTCCTGC GGGGCCTCCT 002560 002561 GAGGGAGCCC TTGGGGTCAC TCCACAGTCT GGGCTTTCTG TAGTCCGGTG GGTCAGGGCT CCAAGCACCA GGAGAGATCC 002640 002641 AGGGATGCGC TTATGTTTGG GCCACCCCCG GTGGGCTTGT TCGTTCAGCC CCCTTCGTTT CCTGGCCTGC TCTACTTATA 002720 002721 TCTgtttgtg aagaattatt acacagaatc tagaaaccag ctttcccttt tctccCAGGG TTGGAGCCCA GGAAGCAAAC 002800 002801 CAGCACTGCA CCCTAGATTT CAGCCAGAGG ACGAAAGCCC TGCCCTCAGC TTTCTCAGAC CAGCCCTGGA GTAGGTGGCC 002880 002881 CGGGGAGACC TGGGCAGTGT CCCTGCTTGT CCTGCAGACT GTGTGGCTCT GCAGACCTCT AGATGGAGGA GGCACAATTC 002960 002961 TCTAATGCTG GACGAGGACA CTGATCATGG AAACTCACCC CAAACCTTGA ATCGTGATAG CATTTGAGGC AGCCTGACCG 003040 003041 GTGCCACATG AACCTGAAAG GAATCAAGAT ATAATTTATT TTGAAAATAA ATCAGACACT TTCAGAATTT GAGCGTAAGA 003120 003121 AGTTAACATG TCTGATGCGT TGGAAGTGAC GTTTTCTCTA CAGTGGGATG GTACTGAAGG GATTT |
Predicted Small Protein
Name | NONHSAT010731_smProtein_2084:2263 |
Length | 60 |
Molecular weight | 6823.8396 |
Aromaticity | 0.169491525424 |
Instability index | 46.1983050847 |
Isoelectric point | 7.77520751953 |
Runs | 9 |
Runs residual | 0.0080858342404 |
Runs probability | 0.0338475730634 |
Amino acid sequence | MFLHSLAIMECSGCGDPCASKPFFAWGPGILWERLRPHHWSSDIYAPVRWTKDVFWKGT |
Secondary structure | LLHHHHEEEEELLLLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLHHHHHEELLL |
PRMN | - |
PiMo | - |