NONHSAT011262
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011262 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6646 nt |
Genomic location |
chr10+:6828670..6843827 |
Exon number |
3 |
Exons |
6828670..6834089,6834418..6835207,6843392..6843827 |
Genome context |
|
Sequence |
000001 GGGCCCTAGG GGGAGGAACT GAATTCTTTA TGAAAGAGGG AAGACTTGAG CTGACCTTGA GATGCATTTT AAATCTTTCA 000080
000081 TTTTTTAAGA AAATATAATC GCATGGCAGA AAACTTTCAA AGTTCAGGGA AAAAATCACT TCATTGCAGC AGTCATTCTC 000160 000161 TACAttcttg gcaggtttat tcataatagc atgaaaggaa aacagcccaa aggtccatgc gcagcaaaag gaataaacag 000240 000241 attaacagta cagtcacacg atggaatact aactccatag cgctaaaaag gaatgagtgg atacatacag cagcagggat 000320 000321 taatctcaaa tacattaggc tgagtaaaaa aagccagacc caaaaagtgc atttatagga agttcaagaa caggcaaaac 000400 000401 taatctatgg ggataggaag caaaatcata ggtgctgctg atgtaggaga ccccctgata gacaggggcg cagggaactt 000480 000481 cctagaattg acgctgcatt ccaactgggg cattgggcag gtagtgtata ctgttgtcaa cactcatact gtgtgcactt 000560 000561 acgagctgag cattttacag tatgtagtgt gtaattatat caccccaaat aaTTGAATCT ATTTTCCTAA AACCTATTAC 000640 000641 TCAGTGATAC TAGTGTTTCA CTTGGAATCT ATGCATTTTT TTCCTACAAT TGAATGTTGA TTATTCCAAC CTGTACTGCA 000720 000721 GACTTGGGGG AGCCAAAGAC AAGCCTCTGC TTGATCTTGC TTTCAAGGTC TCTGAATTGA GATCAGACCT TCACGATTCA 000800 000801 TTCTGTGTGT TCACACAAGG GTAGGGAAAG AGCTCTGGAT GGAAAGAGAT ATTCAAGTTC ATGTTACTCT GCAGAGCTCC 000880 000881 TGAATCAATG ACTTGAGACT AGGCAAGAGA AAAAGAGTCA ATAATCTAAT AGGTTTACTT TTCTTCAATA AATGGAGGCC 000960 000961 ACTCTTGATA ATAATGACCT CAACTCTATC CTTGTTATCC AGGAATAAAG TGCATCAGCT ATACTCTTGA GTAAATGAAA 001040 001041 CCAGTCTATT GAAAATAATG aatagaggct agcatttatt tacttattac tgagccaagc aattcacatg cattaatcat 001120 001121 ttaatcctca caatactcta tgaggcagac aatatgaaga ctgtttttcc gagcacagaa aggttaagta acttgcctaa 001200 001201 agttgcacag ctagtgagag gagaagccag aatCAATGCA TTACTTGGAA TGAGGACCAG GAAATGACAA TGGAATATAG 001280 001281 AGGGAAGCGG ACAAATGGAA AATAAATAAT TAAAACCTCT ATTGGACAGG CAATTCAaag agacattggg tattatcaag 001360 001361 caaatactca tttgcagaca atgaaactga ggcccatgaa ggttacgtga cttcccaagt cattcatcta attaggagag 001440 001441 agctgggaca agaagccata ttttaaaaat cccagctcag ggcctttcta ctACATCaaa aaaaaaaaaa aaaaaaaaTT 001520 001521 AATTGATTTT TTTTTCACAT AATGTCCAAT TTTGAAATCT ATCCCTGAGG GGATTGTTGG TTAGATATTC ATAGTattat 001600 001601 aaaattcaag tcttggaaac ggcctggaaa gatcttatgg ccgttggctc caaattcaag cagcatcaca cttaaaccat 001680 001681 cccatccaga tgagaatctt tcccagtttt taaagtcttc cagaTGTATC TCAACTGGAT TTTTAAATCT GTTTTCCAGA 001760 001761 GCAAAACAGC AGAATTTGGA AAATAACCTA ATATGCATAA ACCATGAATG GCATCCCCGG AGAGACACAA GCCCAAACCC 001840 001841 TGAGCGTCCA GAGCATTTTA ATTCGGGATG CAGTGCTTTA AAGCCCTAGG GATTATTTTC AGCAGAATTG ACTCTATGAA 001920 001921 TATGAATTAT TCTTCATGTC AGCCTTTTTT TTTTTTTTTC TGAGAAGGAA ATCTGATACA AGATTGAATA GGAGAACAAG 002000 002001 TAGCAGAATT TAGGGCAATA TAAAAGGGCC CTGGAAGGCA GGTGAACACA TTTTTCTTCC TTGCCCAGAA AAATGTCAAT 002080 002081 AGGCATTTTA CAGCTTCTCC TTTTCTTTCC TTTGCATTCT GTCCTCACTG AAAATGCCCA GTTCACAGCC TGATATTCTT 002160 002161 TGAGCGTTTT TCCATTCAAG TCCCAGTTAA GTGATCACTC CTGGGTCTCC AACTGGTTTC GGTCCCGAAG CTGTGTTTGC 002240 002241 AGAGATGGAA GGATGCTTGT TGAAGTCGGG ACGTCCAAGG GCCACATAAG TGAGGATCTA ATTGCCGTGC CTTGTCTCAA 002320 002321 GGAGTCTTGA GTTCATGATG TCTTATATTT CTTCATTACT TCCCAAAGCA AAACTTTGTA CATCTAGACA TATACGACAA 002400 002401 GTTTGTTTTT TATGATTGTT TTAGTTTGTC TTGGCAATTG ACGTGGGAAG TTGTTAATGC AGTAGACAGA TGAAATAAAG 002480 002481 ACTTGGAGAT TAGATGAACT GCTCCAATCA GAGCCTGGAT GCAATGCCCT GTTGCCCTCT CTTTCAGATC TATCCAAAGT 002560 002561 TAACTTGACT CCATCGACTG GCCCTTAATT TCTGCAGTTC TCTCAGTTCT GGGAATAACC TTATGATTGT TCTTCAGGTG 002640 002641 GAGACCCTAG AAAACCTCCA GAGTTTGCTT TGATCCTCAT ACTCCACCTC CCAAGGAGGA ATAAATTTGG AAGTGTATAA 002720 002721 TAAATCAAAG ATAAATTTGG AAGCACATAT GAAAAAGCTT TTATGggact tctgcttttg agtaagatgg agatattggt 002800 002801 gacagactaa tcctgaaaat cagaacaact agatgaaaca gataaaatcc aaaaattatc tgttttaaag gtaccaagga 002880 002881 gctgttgaag caatgtaggt agagaggctg aaagacagca aaggggagaa tctgcaccag ccttttatcc tggggcactg 002960 002961 tgggttcact gtgagttctg ggtgagaacg agaagcttgg catctaaact ctacccaaac cccttctcag cgggcaggat 003040 003041 gcagaggttt cagcagagct cagggaaggt agccaggatg tgcaacacaa tagggccttc aacacaggac cagcttcccc 003120 003121 ctcaagacat ttgctgaatt ctgaagctgc aagggaagga cataggaaag ctaagctgag tacatcagaa gagctgggtc 003200 003201 gagttttctg cagtgtgacg atgccttgga gacccaggtt agagttcagt tcccaggaga ggcagtgttc ctgggatgca 003280 003281 ccagcctcag tcaaagccct ggaagttcat gttgccggaa gaggatcagc ccagaggagg cttacccaaa ctgcaaAtta 003360 003361 aaggcaaaat agtgaaagct ttccctcaag tggtggaaag aaataagggt gcctactgtt taccacttct aacctacatg 003440 003441 gtcctggaag tccaggccag ggcaataatg caagccaacg tataaagggc agaatcattg gaaaggaaga aaaaacttac 003520 003521 tagacacaga tgaactgtct ctatatgaag aaaaatccaa aagaatctgc aaacaactta aatttaatgt ctctttacgc 003600 003601 agtctccgca tgtaaggtca gtataaaaaa atcacctcta tatctataga cctgcaacac agagaaaata aaatcttgca 003680 003681 attgcaggat ttgcaacagc atcgaggaat attaaatact taaatagaaa ttttaaagag gtatatgaga tttgtgttct 003760 003761 aaagccacaa agcatctctg agagggaact caaagggaga tctaaataag tagatatagt aaataagtag atctaggaca 003840 003841 tttgtcaatc agaagactca cttgtaaaca tgtcgactct tcctacatgt atccccagcc tcatgcaatc ccaggagatt 003920 003921 acatgtgtgt gtatttgtaa attgactcaa gtgattacaa gatttatatg aaaatgcagt gagccaaaaa tagccaggaa 004000 004001 atcttaagga ataagagcgg agAGCAGAGG AAGGCTTCAT GGGCCGGGTA GGGGGGCGGG GAGCCTTGAG CTAAGCCGTT 004080 004081 GGGTGCATGG GTGGTAAGTG GAATTTTGTT AGGGACTAGA ACCATAACAA gtttgttggg gtaaccctaa cacctatcct 004160 004161 aatgcctgcc tgatgcctaa caaatattca ataaatattg gttaaatgTA CATATGAATG AATGGACAGA TGCTTGAGAT 004240 004241 AAGAGTATGT CAGGTTAAAA GGACAGTAGA AGCAACAGTA AAGAAACACG AAACTATCTT ACAGTGAGGC ATCAAATGTG 004320 004321 TCCTAAGTGC GTATGTGAGC TGCAGAAGAA AGGGAGGCTA GAATATTCAG ACAGGGCAGT GTTGTGCAGA GGTCTGAAGT 004400 004401 AGGCTTGTAG CATTTGGACC TTACTCTTTA GGCATCTAAC ATTTTGGAAC AATGTAAAAT GAGTGATAGG TTGGGAGATG 004480 004481 AATTGGGCCA GTGACAGGGG AGCCACATGA CACCCACCCA GTCACTTCCC TGAAGGACAC CCTCTTTGCT TTCTATATCC 004560 004561 AGCACCAGCA ATAAAATTGG AATTCTTTGC TAAGGTCATT GTTCATATAT TTAATATAGA AATCTCCCCA AATGTTAAAA 004640 004641 GCTGACAGAC ACTTAATTTA AAAGCCTAAG TACTCTCTGT CTGAGCCCTG ACTATGCCAA AAGCAAAGCT TTTTGTGCTA 004720 004721 TCAAGAATTT GATGGGATTT CCTTTTTGCA TTTCCTTTTC AAAAACCATT AGAACAGCCA GCACCATGCT CCTCTGGAGA 004800 004801 CCCTTACATT CTACCTTCAT GAATTTTCTT GGTTAGGAAC AGAGTGCATG AACTCTTTGG GTCTCTCTGT TAGGATGGGT 004880 004881 TTCAGCTAAC TGTACTTTAG TACAGTTAGT ACCAGTGCTT TAATACACAC AAGCTTACAC TCACAACGAA GTCCAGAGCA 004960 004961 AAGCAGTCTG TGATGATTAT GGCAGTTTCA TGCTGTCATC TCCTATGAGA CAGCCCTGCC AGAAGGGctg ctcacatcct 005040 005041 gatggctaga actggttaca tggctgtgct ggttgcaaca aaagctggaa aatgaagtGT ATTGATACTC CAAAAGAAGC 005120 005121 AGAGTTTCGG TAATACAGAA GAATATTGGT GGACATTGAA TAGGTCACCA GCAGTCATTG CTACATGATC CAGTCTTCCT 005200 005201 TTCTAAAACA AGAACAATCT TGTAGAAAGC GGGAACTTTG AGACTTTCTT AGCTGAGAAA TTTGTTGTTA TTGTTGCTTT 005280 005281 ACAATCTCTC CTCCTCTCCT AAGAAGTTGT CCAAGGAAAC TGGAGGTTCT TTGTTTCTTA AGCTGGTTGA AGATATAGTT 005360 005361 TGCAAACCTG AACAGAACAA AATAACTATT CACCAGAAGA AGAAGAAAAA AAAAAGGCAG CGAATATGTG ATGTtttcac 005440 005441 agatcatgaa attgaagggt acaaaaaaag aacttctatt tttctgtgac taaatgtcga tttcaagttc tcatacctcc 005520 005521 tggagttaaa aaataagatc cagtcaattt cagtgaaaac ctgttacttc tgcttttcag tgatttgggc tttacactca 005600 005601 CAGATCTGAG AGTCTCTCTT GCCCCCCTGG TAACACATTT CAGAGCTGGA GAAAGAGAGG GAGAGGATGG GGGTTTGGAC 005680 005681 ATGGCCCATG TTCATCTTCC CAGTATTCTC TGACAGTCAG CATTCTCCCT GCTGACTTGG GCGGATATGC CATGTCCAGT 005760 005761 TGGGTCCTCA CCATTCCTGG TGGCCTCACC TGAGCTGAAA CAGCATCTCT CCTGGGCCCC AGGTGAAGGG TCCATCATGC 005840 005841 CTTGTGCTCT GGCCTCCTGC TGCCCCATGT GGAGTGGTCC TTTGCACCTG CCGGCTCAGT CTCTCTCAGC CACCCTGTGT 005920 005921 CTCCTTGAGG CAGGGGGAGA CTCAGGCGCA GTCATAACCC TCTGAAGTGC TAGGACTCCA TGCTGCCATG TAAAATACAC 006000 006001 ATTTCTCTAT TTTTTGGGCT CCCAAAATAG AACTAAGGTT GGGATGGGGT AGTATCTGTA CTATGTTTCA Aacacacaca 006080 006081 catacacaca cacacacaca cacacacaca cacacacaca cacacGGAGG AAGTTTCTCC CTCAAAGACC CAAAACTAGC 006160 006161 AAGAGGTACC AGTGATGGGT CTTTTGAAGG GGATGTCATC TGCCCGTCAC ttgcattggg gtcaagcggc attgcagaag 006240 006241 aaaataaggc atttaggttt taggtcaggt gtgagttgag gttttatgtt tttgagaaca caggccaagg gagtagaagg 006320 006321 aggaatggag ggtggaatgt tcccatagtg aaggaagcaa gcctagagag aagagagagt agagaaatgg agggaaggga 006400 006401 ttcaggggtt cttaccttcc agaaaagtgg gaaaaggggt ttgggtgcag agataagaag tcagggcatg gaaataaggg 006480 006481 atggggcaca gaaataagag gtcagggcat ggaaataagg gattggggtg cagagatatg aggttggggt acttgcccat 006560 006561 cctctagaaa agcaggactt gccactaaga gtgaaggaga aggggttgag gagtacttgc ccctctccca gaaaagcaga 006640 006641 gaaggg |
Predicted Small Protein
Name | NONHSAT011262_smProtein_3275:3484 |
Length | 70 |
Molecular weight | 7890.3459 |
Aromaticity | 0.0724637681159 |
Instability index | 61.5028985507 |
Isoelectric point | 9.72967529297 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0225715911991 |
Amino acid sequence | MHQPQSKPWKFMLPEEDQPRGGLPKLQIKGKIVKAFPQVVERNKGAYCLPLLTYMVLEVQ ARAIMQANV |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLEELLLEEEELHHHHHLLLLLLLLHHHHHHHHHHH HHHHHHHLL |
PRMN | - |
PiMo | - |