NONHSAT011597
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT011597 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2442 nt |
Genomic location |
chr10-:16554079..16556515 |
Exon number |
1 |
Exons |
16554079..16556515 |
Genome context |
|
Sequence |
000001 CTAAGCTTAT TATTCTGAGT TTGAACACTG GATTCGTATG GCTAACGTCA GTGAATCAAG GATCCCAGGG GATGCCAATG 000080
000081 GCAGGGCACC TCAGTTGTGT ATATGTGGGG AAATCAAATG CTACCTGACT CACATCTGTA TCACTCAGAA ACATTATGTA 000160 000161 AAAAATATCA AAGCAAGATA AGCAGATGTG TGATCCACTA CCGCCAAAGC AAATACTCCT TATCGTTAGT GTCCATGTGA 000240 000241 ATGAAGTCCT ATATAGATCA CAAATTTTTA TAGACAAATC TAAGACATTG AATTATTTCT TCTATATATA TGATACTTTG 000320 000321 GTGTACTGTG ATCTTGCTGC TTTTATCCAT ATGTCAGCTT TGGTTCTTGT GAGTTTACCT GCTTATTATG ATACTTGGAG 000400 000401 TCCATTCATA GTGTGGGGAA GAATGATTTT TGCCCTGCAG GAGAAGGTCT AATTGAAATA ATGCTGCTTG TCCCCAAAGA 000480 000481 AATTGTTTGC CTTGTACTCT TGTTAACCTT AGAGCTAGAC CTGGGAATGA TTCAACTTCA AGCCTTAACC TGGAATTTTC 000560 000561 TGGATTTGAG GGAATTCCCA AGCCTATGAT CTTTTTCACA TTTTCTTTTT CTTATATGAA TTTTCTTTTC TCTCTTTTCT 000640 000641 GGTGATAGTC TTTAAAAATA GAGATTGACA GTGTATCATA GGATTACCCT CTAAGTGTGA AAATGTGTAA TTATGTACGG 000720 000721 TATTTAGAAA AAGCCCTTAT GTGTCCATTT TGTCAACTGA ATACATTTAG ATTCACTGGG AAAGTCAGAG AAATTTATTC 000800 000801 TTTAGTATCA AATCAAACCG AGGCTTTTGC CATCTTTGGA AGAAAAGATT ATTCATAACC CAATGCACAA AGGTTTAATT 000880 000881 TGAGCTGCTG CATACGTCAC CAAGGGGACA CTAGGTGAGG CCTTCAAATG ATTACTACAA GTCTGTGGCC TGAGGTTATT 000960 000961 TTAAAATTAA CAATTTCGCA TATAGCCTAT ATGACAACAG AGTGTTTATA TTTTATACAA ATATCTGCTA AACATGCACA 001040 001041 CATATACTCA CACACACATA TATATATTAG ATGAAATGTT TTATTTATGT ATAAAACATA TACATATAAA ACATTTATAT 001120 001121 ATATGGCTTT ATTCCACAGG GCACAGTGGC TGTATAGCCT CAAAATTTTA ATATAAAAAA GTGTATGCAT ATATACACAC 001200 001201 ACAAACATGC ACAAATTATT TAACTTATTT TGGGTTAAAA TATATTTTGA ATGACAATAT ATGGAGTAGC AAAAACAGTT 001280 001281 AAAATGACTT CTCTTTAAGA GTTATCCAGA AAATTAATTG TATTAGGTCA AAATGCCCTT TATTTCACAG GTCTGTAAGT 001360 001361 TAAGGCTATG GTTGCTCTAT TACCATATGC CAATCAATAC TTTAACTGCA TTCTGTGACA GACTGTTAAT ATGAGGACTG 001440 001441 CAGACACCAA GTGGCTCTCC TTTGCAGTGT TTATGAATTA CATGCATTTG AGCTATCAAT TTTTTTTTCT TTTTTCTCAG 001520 001521 GTGGAGTGAA GCTGACAGTA CAGTAGATTT GGAGAGTAAT ACAAATCCTT TCTTTCTGGT TAGAACACAC TGCCAAAAGC 001600 001601 CATCTCTTTC ATCTAAGGAA AAGATTAAAA ATGCATGTTG ATATCTCCTA ACTATCACAC AACTTCCACT ATTACAATGA 001680 001681 AAAATCTGTT CCCCTTTCAT TGCCTCTGAA AACTCTTTGA CGAGTAGATT TCAAAAACAG AGATTTTAAA AATTTGCTTG 001760 001761 CTTTACTGGT GAAGGACATT TGCATTTTTT TTTTTTTTAT TTATTTAAAG GAATTAGTTT GTTCTCCTGG CTCATTCCTC 001840 001841 TTTGTTACTT TCTGTTCCAA TACACAGAAA GCTTGATCAT CTTTGATCAG CAGAAATATC TTTTATTTAG CAAAGCTCAA 001920 001921 CTTCCCAAGA GTTATGCATG GTGTGCCTAT CTGAAGGTGG TGTTAGCTCT GTTGAAATGC CTGGGTCTGA GTAACTGTCA 002000 002001 TGATTTTTAT GATTAAAAAC AGACTCTTCA TCAAGAATAA TGACTAATTC TAATTGGTCT TTGTGATATG TAAGATAACT 002080 002081 CATAAATGAA TTGCAATGGA TTTTATTTCG AATTAACTAT ATATTTATCA AAGAGGAACT GGCAGCAAGG GTTTGGAGAA 002160 002161 TATTTTTAGG TACCAAATAG CATAGTGAGG ATTCAACCAA AAGATGAATT TATAAGCAGC AGTGCCCATC ACCTAAGTGT 002240 002241 TTTAACTAAC AGGTTTTAAA AACATTTTAT TTACACAAAA TATCAGGGCT GGATACCTTT TAAAGAGGAG GCTCAAGTAT 002320 002321 CGGGCTGTCA TTTCCAATAG ATCTGACCTT TTCTTCAGAT ACATAAGCAT TATTTTCTCT GTTTAGGTCC AAGGAAAAAC 002400 002401 AAAAGGTAAA GGAAATAAAG GGAATATACA TAAGGCAAAA AG |
Predicted Small Protein
Name | NONHSAT011597_smProtein_185:451 |
Length | 89 |
Molecular weight | 10327.1268 |
Aromaticity | 0.170454545455 |
Instability index | 52.0944318182 |
Isoelectric point | 5.99798583984 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.0490918726214 |
Amino acid sequence | MCDPLPPKQILLIVSVHVNEVLYRSQIFIDKSKTLNYFFYIYDTLVYCDLAAFIHMSALV LVSLPAYYDTWSPFIVWGRMIFALQEKV |
Secondary structure | LLLLLLLLEEEEEEEEEELLEEEEEEEEEELLLLLLEEEEEHHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLEEHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHH HHHHHLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTT TTTTTooooTTTTTTTTTTTTTTTTTTi |