NONHSAT012838
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012838 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1339 nt |
Genomic location |
chr10-:38977632..39022206 |
Exon number |
10 |
Exons |
38977632..38977730,38978430..38978565,38979450..38979558,38983372..38983521,38984365..38984470,38984942..38985062,39005042..39005216,39017958..39018085,39019400..39019542,39022035..39022206 |
Genome context |
|
Sequence |
000001 CATACCTGTA CAGCCTGATA CTTTACTGAA TATACCATAA GCAGTTGTAA CACAATGTAA GTACTTGTGT ACCTGAACAT 000080
000081 AGAGAAGGTA CAGTAAGAAT AGAGTATAAG ATATTTTAAA ATGGTACTCC TGTATAGGGC ACTTACCATG AAAGGAGCTT 000160 000161 GCAGGACTGG AAATTTTGGC TTTTGTTGCC ATTGCTTTTG GTGTTTTAGA CATGAAGTCC TTGCCCATGC CTATGTCCTG 000240 000241 AATGGTAATG CCTAGGTTTT CTTCTAGGGT TTTTATGGTT TTAGGTCTAA CGTTTAAGTC TTTAATCCAT CTTGATGCCC 000320 000321 AGCTTTGGTA TGAGAATGAC ACTGGCCTCA TAAAATGAGT TAGGGAAGAC TCCCTCTTTT TCTATTGATT GGAATAGTTT 000400 000401 CAGAAGGAAT GGTACCAGTT CCTCCTTATA CCTCTAGTAG AATTGGCATG CACCTGTAGT CCCAGCTACT CAAGAGGCTG 000480 000481 AGGCAGGAGA ATCGCTTGAA CCCAGGAGGC AGAGGCAGAG GTCGCAGTGA GCCAAGATTG CGTCACTGCA CTCCAGACTC 000560 000561 AAAATATATA TATATATATA TATATATATA TATATATATA TATATATATA ATCATTATGT GGAAATAAAT TGCCAACCTT 000640 000641 TTCATGTCAC CTCCCAACCT TATCTTTATA TCCTCTGATT AACAATTTTC ATTAGTAATG TGTTACACAA CAAATACTTG 000720 000721 TTTAGACTAA CCTACATTTT TCTCAAATAT TATGTCTTCT TCATTCTTTC AATTATGTTT CTGAAACTAC CAATAATTGT 000800 000801 GTTTTAGATC TTTTCCATAA TCTAAATCTC TCATTTTCCA CCTCAAAAGT GCTGGGATTA CAGGCGCGAG CCACCATGCC 000880 000881 CAGCCTGGTC CATTATTTTA GTAAATGTTT AGCCCTCCAA GGCTTCCAGT TTTGCAGGAT GACAATAATC AGAGGGGACG 000960 000961 AGGAAAGAAA CTTTCTTCTA ACTCTCTGCC TGGAGTGTTT ATTTTCTTTC TTTTAAGGGA TGTTACTGGC TGGTTTTACA 001040 001041 ATTAGGAATG TTCCATTCAT CAATGAACAT GTCCATGTTC CTAACGCATG GTCTTCAATT TTAAAATGAG ATTATATTCT 001120 001121 CCAGTAGAAA GTATGAACCA AGGAGAAAAT TGAAAAGTTC TCTCTTTTAA AATGAATTAT GCAGTTTTTA AGTTATTTTC 001200 001201 TTTGGCATGT TAGTATTGTA TTTATACTTA TCACGTTAAT TTCACGTGAT CAATTTATTC CTTTTCATCT GTATTATATC 001280 001281 TGTATGTTTT AATCTATCTA ATGGCCTATT CCTCATAACT ATATGTAAAT ACAGTTGCA |
Predicted Small Protein
Name | NONHSAT012838_smProtein_875:1015 |
Length | 47 |
Molecular weight | 5469.4702 |
Aromaticity | 0.173913043478 |
Instability index | 64.6652173913 |
Isoelectric point | 6.51031494141 |
Runs | 7 |
Runs residual | 0.00918737060041 |
Runs probability | 0.0311530017413 |
Amino acid sequence | MPSLVHYFSKCLALQGFQFCRMTIIRGDEERNFLLTLCLECLFSFF |
Secondary structure | LLLHHHHHHHHHHHLLLLEEEEEEEELLHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |