NONHSAT012930
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012930 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3214 nt |
Genomic location |
chr10-:43274740..43277953 |
Exon number |
1 |
Exons |
43274740..43277953 |
Genome context |
|
Sequence |
000001 CTGCGGCCTG GCGCCGGTTA GTTAGTGTGG TGCAAAAGCC GGAAGGAGAC ACATTTGGTC CTGGCCTCCC GGCAGTCACC 000080
000081 GTGCCAAGGA CGGATGGACT ATCGCTTGAT TTGGAGTACA CTTCCTCCTC TTTAAAGATT ACAGATGAGG GGGATCTCGC 000160 000161 GTTCTGGGGT GCCCTAAAGC CCTCTTTTgg cagggcgcag tggctcacgc ctgtaatccc tacactttgg gaagccgagg 000240 000241 agggaggatt gcttgagccc aggaattcaa gacaagcctg ggcaacatag ggagcctacc tctctctctt aaaaaaaaaa 000320 000321 aaaaaaaaaa ttagccggca tcgtgccggg cgcctgtggt gcttgtggtc ccagctactc tggaggctga ggtgggagga 000400 000401 tcgcttgatc ccaggaggcg gagtctgcag tgaactgaga tgagccactg gacttcagcc tgggcaacag agcaagacac 000480 000481 tgtctctaag aaaaataaaT AACATAAGGC CCTCTTTTGC CAGGACCAAC AAACCGTGAG GGCAGGGACA AACTGACCCA 000560 000561 GCCTAAACTG CCTCGCCCTC CCTAAACCCG GGAAAGGGGC TTTACCTGAG TGAACGTAGC ATCTTGCCGT TTTCTTACTG 000640 000641 CACAGCTTTA CCTTCCCAGG GATCCGCCCA TTGCCACCTG AGGAAATGCC TTGGAGTCCA TCTAATCCCC AGCCCAGCTA 000720 000721 CTTGGGAGCC TACAGAGCGT ACATTGTCAG AGGATGCATC TTCCTTTAGT CTTGGAGGGT TTCTTTTCAA TATGATCCCG 000800 000801 CTGGTGCATT CAAGGCTCAA TTCTACACCA AAAACTAGGC CCACTCCTGT CACGAGAACC CCAGGCGTCA GGTCTTCTCA 000880 000881 CAGGCACCTT GTTCTTGCCC TCAGCAGCCC CCAGGTATTC ACTCTGCATA TTCTAGATAC TGGGTGCTGG ACTTGGGAGG 000960 000961 CTACCCACGT GGCACATGCT Tcccttatcc ctgaagagct tagagtgttg taacttcttc acactacacc tcttacttct 001040 001041 tgaagatttc agtatccagg tagataatcc ttccaacatc cttttggtct catgaagccc actcctgtcc tctgccctac 001120 001121 ctcagcttcc ccctccctcc atgatcagac cttagacctt gtcaggtcca aggactgcaa cccccacagt atcccactct 001200 001201 gaccaggtct atctatcctc ctatctgtcc aggtcactcc ctatactgcc ctgaaacaaa actcctgcaa ccttaccagc 001280 001281 acctccaatc aagatcttac tacttgttca ctgtttcttc ctttatgacc ctctctagtg agccagctta aactcaatgg 001360 001361 ccaaccattc tcattgatcc cttgcacacc tcctcaactc atgcacctcc ctgtcatctc ctatctgctt ggtaagatgg 001440 001441 gagccctgga taaacccagc tctccatcta ttccatgcca cgacgatgca actaaacatg gctggaggaa aacaggacca 001520 001521 tgccagccgt cctcacttta atcattcttt gcctggtcta ttcaatctcc cattgttcca agtgagtatt tcgcacttcc 001600 001601 tcctctctgt tcaatccttc ccactgcctc tcccttcctt gcctcctgct ttgctaagag aatagaagtg gtaaaagtct 001680 001681 tccacagact cccacgtcca cctccaccca tccgcctctt attgcctccc tgtgactgtg gatgaacaac tgctaggtcc 001760 001761 acccaaagaa tcctgcactg gactgctgga tcccatcatc tcttactgct ccagggtgtc actccagcca gcctatcctc 001840 001841 tctgcaacat cagcaatatt ttcctttcta ctggactctt ctcatcgtca cataacatgc agctatttct ctcatcttca 001920 001921 aaacaaagaa attactcgac cctatttcct ataccaggac ctgcaccttt tctatgttcc cctttgcagc aaaacttcac 002000 002001 aaaagaacag tcaatacata ctctggcccc tctcctattc actttgattc actTGTCTCA CAGGACtcca cctgcagccc 002080 002081 tggatgctct ttctcagctg cttttgctgg ttcccctgct ctcacctgtt taaattagag tgaggccata ggtttcgggc 002160 002161 ttcagttttc ttttcttctg tgtctatact tattccctgg atgatctaat tctgtctcag ttttatatgc catctgtatC 002240 002241 AGTTATtgat atgttttggg tctgtccctg cccaaatttc gtgtggaatt gtaatcccca atgttggagg tggggcctgg 002320 002321 tgggaggtga ttggatcatg ggagcagagt cttcatgaaa ggtttagcac cattcatcta gtgctgttct catgatagag 002400 002401 ttctcacaag atctggttgt taaaaagtgt gtagcacctc cccccaccac cttttcctgc tccagccatg taagacatgc 002480 002481 ctgcttctcc ttcaccttcc accatgattg aaagtttcct gaggcctccg cagaagctgt catgcttcct gtacagcctg 002560 002561 cagaatcgtg agccaattaa acctcttttc ttataaattg cctagtctca ggtacttctt catagcagtg agagaacgga 002640 002641 ctaatacagt tatcaattta ttgcatctct gctacaaact cattcttcat tgcctgctct gcaaaaatgg aactgggcca 002720 002721 tttaaatatt ttcctctgac attatgttag gttttgtcag tagagagcaa tggagagact ttgtgggcga aagcagtctt 002800 002801 tgttcctggt tctcctatgc tccctggcct ggctcctgca ggtgggtgac ttctccagaa acacagtggc cagtgcccag 002880 002881 caggtcccac tcccctcacc agctccaggc agttttgtta tagagtaact cttttgagac accgctcctt tccccagcac 002960 002961 ctaaagaagt atttctagta agttccagtg gtatagcacc agtgactctc ctgacatgca gagggccata gctgggttcc 003040 003041 tctgatgagg tgtaggggca gtgcactagg aggagaggac tctcctgggc tctctacctc agccctaggc tagtggttgc 003120 003121 tcctcctata cttcctacta gtctgtgcct ggttactcca cttccctgtt gcaattaaca cttctttata tacatgtttc 003200 003201 ctgttcaaat gact |
Predicted Small Protein
Name | NONHSAT012930_smProtein_791:1012 |
Length | 74 |
Molecular weight | 8167.3939 |
Aromaticity | 0.041095890411 |
Instability index | 50.2684931507 |
Isoelectric point | 10.5956420898 |
Runs | 11 |
Runs residual | 0.00653999116217 |
Runs probability | 0.0487787252493 |
Amino acid sequence | MIPLVHSRLNSTPKTRPTPVTRTPGVRSSHRHLVLALSSPQVFTLHILDTGCWTWEATHV AHASLIPEELRVL |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEEEEEELLLLLLLLHHHH HHHLLLLHHHHLL |
PRMN | - |
PiMo | - |