NONHSAT012980
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012980 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3524 nt |
Genomic location |
chr10+:44134003..44137534 |
Exon number |
1 |
Exons |
44134003..44137534 |
Genome context |
|
Sequence |
000001 TATCATGATG TATTATGTAT TTTATGTATT GTTTGATTAG ATTTGCTAAA ATATTAAGTA TTTTTGTGTC TATGTTCATG 000080
000081 AGGGATGCTG ATGTATAATT TTCTTTTCTT ATGATATCTT TGGTTCTAGA GTCAAAGTAA TACTGATTTT ATACAATGAC 000160 000161 TTGGTGCATA TTCTCTTTCA TTTTCTGAAA AAATGTGTAG GAATACTTTT TTTTATGTTT TACGTTATCA GTGAAGCCAT 000240 000241 TTGGCCTGCA GTTTTCTTTG TGTGAAGGTA TTTGAAATTC TTTAATAGAT ATAGGGATAT TGGATTTTCT ATTTCTTTTC 000320 000321 TTTTCTTTTT TTTTTTTTTT TTTTTTGGTG GAGACAGGGT CTCAGTATGT TGCCCAGGCT AATTTTAAAT GCCTGGCCTC 000400 000401 AGGGTGATCT TCCTGTCTTG GTCTCTCAAA GTGCTAGGAT TACAGGTGTG ACCCACTGCA CCCGGCTGAT TTTCTGTTTC 000480 000481 TTCTTGTGTC ATTTTGGCAA GTTGTGTCTT TTAAAGACTT TGTAAACTTC ATTTTTGTTG TTGAACTTAT CGACATAACA 000560 000561 TTGTTCACAG TATGCTTTCA TTATTCCTTT AATATCTTTG TAATTTGTTG TGATGTCCTT TCTTTTATTA CTGATATTTG 000640 000641 TAATTTGTGT TTTTTTTTGA TTAACCTTGG TATGAGTTTA TCAGTTTTAT TAACCTTTTC AAAGAGCTAA CTTCTGGTTT 000720 000721 GCTGATATTC AGTTTCATTG ATCTACTCTA TTATGAACAA ATATCTTCTT ACTTTGGTTT TGATTAACTC TTTTTCTAGC 000800 000801 TTCTCAAGTG GGTAACAGAT AGTGATTTTA TGTTTTTTCT TTTCTAATCC AGGCATTTTA AAGCTACACA ATTCCCTAAA 000880 000881 GAGCTGCTTT AACTGCAGCC CTCAGATTTT GACATGTATT ATCATTCAGT TCAAAATATT TTCCAATTTT CTTTGTGACT 000960 000961 TATTCTTTGA ACTATAAGTG ATTTAGAAGT GTATAGTTTA ATTTCCAAAC AATTGGGGGA ATTTTCTAGA TATTTTATTA 001040 001041 TTATTGATTA CTAATTTAAT GCTGTAGTGG CCAAAGAATA TACTCTGTAT AATTCAAATG TTTTAAATTT ATTGAGACTT 001120 001121 GTTTTGTGGC CCAGCATATG GTCTGTTTTG GTGAAGGTTT CATGTGCACT TGAAAGGAAT GTGTATGCTA CTTTTGATGT 001200 001201 GTGTAGTGTC CCACAAATAC CAATGGCATC AAGTTGGTTG ATAGTGCTAT TCAAATCTTC CATATCCTTA CTGTTTTTTT 001280 001281 TTCCCTAATT TTACCAGCTG TTGAGAGAGG GGGTGTCAAC ATCTCTAACT ATGGGATTTT GGTGGTGTCT ATATTTCCTT 001360 001361 TGTTCTCTCA ATTTTTGCTT TATGTATTTG GGGCCTGTGA TATTGCATTA TATATATATT TTTTAATTTT AATTTTAATT 001440 001441 TATTTTTTTG AGACAGAGTC TCATTCTGTC ACCCAGGCTG GAGTGCAGTG GCACAATCTT GGCTCACTGC AGCCTCCATC 001520 001521 TCCTGGATTC AAGTGGTTCT CCTGTCTCAG AGTCCCAAGT AGCTGGGATT ACAGGTGTCC ACCACCACTC CTGTCTAATT 001600 001601 TTTGTATCTT TAGTAGAGAT GGGGTTTCAC CATGTTGGCT AGACTGGCCT CGAACTCCTG ATCTCAGGTG ATCCACCCAC 001680 001681 GTCAGCCTCC CAAAGTGCTG GGATTACAGA CATAAACCAC CGTACCCTGG CCTATATATT TGGTTTTCGT CTCCATTTCC 001760 001761 TGACATATCA GCTTCTAACT CTCTTGGAAT CTCCTGAGTG ATAAGAGTGT CTTTTTTATG CTAATGAGAT GACTATGGCC 001840 001841 AGAGGCCCCA AGGTAGCTTC AGGATGGGGC TGGTCACCAT AAAGACCAAA GTAGGATTAG GGGACTGGAA CTTTCAGCAC 001920 001921 CCCCCTACCA CAGGGAGGGG AGAGGGTCTA AAGGTTTAGT TGATCACCAA TGGCCAATGA TATATTTTCT GACCTCTTTA 002000 002001 CTCTTTATTA TTTACTCATT CCTTTTTGCA GAACTATGCT TTTAAGATTA TATACATCTA TATAGCTCTT TCTCTATATC 002080 002081 TATCTATATA TACACATATA TATATTTGAG GTTCTGAAAG TATAAGTATA CATATAGGCA TATATTTTTA CATTTCTTAT 002160 002161 AGTGCAGTAC TGCTGGAGTC CAGCATCTAC TTCTTCATTT TATAACTTGG ATTAGATCTC AGTTAACTAA CCTATACCAT 002240 002241 GCCTCTTATT TTGTCAAAGA GAATGTTTAT TTTTAAACCT TAAGCTTTCT GATGAATCAT AAACCATAAT TTCCTATTTT 002320 002321 GATTTAGCCA GTGAGGTAAT ATCAAGTTGC TTCCCCAGGT TTTTCTTTTT CTTTTTTTTT TTTCTTTGAG ACAGAGTTTT 002400 002401 TGTTCTTGTT GCCCAGGCTG GAGTGCAGTG GTGTAATCTC AGCTCACTGT AACATCTGCG TCCTGGGTTC AAGTGACTCT 002480 002481 TCTGCCTCAG CCTCCCAAGT AGCTGGGATT ATAGGCATGC GCCACCATGC CTGGCTAATT TTGTATCTTT AATAGAGACA 002560 002561 GAGTTTCTCC ATGTTGGTCA GGCTGGTCTT GAACTCCCGA CCTCAGGTGA TCCACCCACC TTGGCCTCCC AAAGTGCTGG 002640 002641 GATTACAGGC GTGAGCCATC GTGCCTGGCC TCAGATTTTT CCTATATATA AATTTTACAA TGGCTTATCC TTAAAAAGTA 002720 002721 CTTAAGTTAT TCTATTATTG CTGCATAACA AATTACCTGA AAATTTAGTG GTATCCAACC ATAATGTTTC ATTTTTCTCA 002800 002801 TGATTTTGTC AGGGATTAGG TGAGGCAGTC TCACTTTGGA GTCTGTCATG CAGTTTTGGC CAGATGTCAG ATGGGGCTGC 002880 002881 AGTCATGTGA AGGTTCTACT GGGCCGGAAA CCTACAATGA CCCTCACACA TGGCTGGCAG GCTGTTGGGA GCTCAGCTGA 002960 002961 AACTGTTGGC TGGAGCATTT ATATGCAGCT TGTCCATGAC AGTGATTTCA GGATAACTGG ACTTTTTACA TGGGCTGGTT 003040 003041 TCACCTGAGA GGAAGTGTCT CAAGAGAACC AGGCAGAAAT TTTTCAGACC TTTTAGAGGC TTTTCAGAAC TATACTTGGT 003120 003121 GTAGTATCAT TTCTGTTGTG TTCTATTGTT TGAAGCAGTC ACAAGCGTGT CCAGATTCAA GTGGTGGTGA CATAGCCCCC 003200 003201 CATCTCTTCA TGGGATGAGT GTCAAAGAGC TTGTGGGCAA TACATTTATA CTGTTTCATG GTTACTGAAG TATATCTTAC 003280 003281 ATATAATAAA ATGCACGGAT CTTAAGCATC GAGTTCAATG AATTTTGGTA ATTGTTTAGA CCCCTGCATC AACTGCCTGA 003360 003361 TGTCAGGTAC AGAACATTGT TTTCACTCTG TAAACTTCCC TTGCGTGCCT TTCAAGTCAA TCCTCACACA TAGTTTTTCC 003440 003441 TGTTCTGTGA AGGCACATAA GTGGAATTAT ACTATTTGTG TATTTGGCTT CTTCAACTCA AATAAAACTT TCAGATTCAT 003520 003521 CCAT |
Predicted Small Protein
Name | NONHSAT012980_smProtein_3029:3217 |
Length | 63 |
Molecular weight | 6958.8254 |
Aromaticity | 0.145161290323 |
Instability index | 56.840483871 |
Isoelectric point | 5.98358154297 |
Runs | 7 |
Runs residual | 0.0407373271889 |
Runs probability | 0.03588462412 |
Amino acid sequence | MGWFHLRGSVSREPGRNFSDLLEAFQNYTWCSIISVVFYCLKQSQACPDSSGGDIAPHLF MG |
Secondary structure | LLEEEELLLLLLLLLLLHHHHHHHHHHLLEEEEEEEEEEEELLLLLLLLLLLLLLLLLLL LL |
PRMN | - |
PiMo | - |