NONHSAT013043
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT013043 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1799 nt |
Genomic location |
chr10-:45322733..45455137 |
Exon number |
3 |
Exons |
45322733..45324287,45418529..45418674,45455040..45455137 |
Genome context |
|
Sequence |
000001 AAAGGTGCCG CCCCGGTCTC TCCGTCCCGC CCCGAGCACG CCCCTCACTC CGCACCGGCC AATGGCACCG CCCCGTCCGC 000080
000081 CCCGCTCTGG GAACGCCGCT CCAGCAGATG TGACATAGAC TGGAAGTGAT GGACCCAGAC AACAATCAGA ACCAAAGCAC 000160 000161 CAGATGAGCC ACCTCAGCCA CGTGAGCCAT GCCAGCCACC CTACCTGTGA CCCCATCTGT GGCCCCAGTT ATCATGGAGT 000240 000241 AGAGGATCCA GCCAGCTGCC GGCACACTTT CGTCCTCCTC CGCACACGAG GATCCCCAGG CCCAGCGGTG TTAGCCCAGA 000320 000321 GAGGAGCGGC GTTTGGGATG TGATCCACAG CTGATCCCTC GTGGCCCCTC CTCTCCCGAA TCCTGAAACA TGAGGAGGCC 000400 000401 CTTCAGCTGC TGGCTCGGAG TCCGACTATG GGAACTTTCT CCGGTCTACG GGGGCAGCAA GGGTCTCGCC TCAGGGACTT 000480 000481 GGTTTATTTA TCTAGCTGGA CTCCATCCCT TAATATCCTA CTTACAGAGG AAGAGGCTTT AGCAGCTAAA TGCAGCCCCA 000560 000561 TCCCCTCCTG TGGAGACTGT GAGCAGAAAA AGAACAGATA TTTACAGAGG CCCGAGCCCC CCTTGTTGTT TTCTGCAAGG 000640 000641 CTGTCGAGCT GGTGGAGCTT CAGGATCCTG GTCAGGAACC CCGAACCCAG CGCTGGAGGC CCTGAAGATC AGGGCACCCG 000720 000721 ACCCTCTTCC CAGCCGCCAA AGGCCTGTGT TGGTCTGATT GTGGATTCCA AGCTCTAATT TCCATCCATC CTCCCAATCC 000800 000801 GAATTCCCTT TGCAGACATA AACACCATCA GCAATGTAGA GAATGTGTTT CCTCATCTTT GAATATTAAC ACTCATCTGT 000880 000881 TTAATTGAGC TACTTTTTAC ATACATGTAA GATGTGCTGC AATTGCAAAA GAAACATGTG CTTCGTGTTC TATAAGCCAT 000960 000961 ATCTTCCGCA AGACCTGCCA TCAAATGATT GCTCAAACAT TTGTTGAATG GGATGAGCAA TGGAGGTTCA GACAGGTGCC 001040 001041 CTGACCTACC CAGGCTGGAG GGTAGGGAGC TAGAAATTCA TACAACCATG CCTTGTTCTA CTTGTTTTGT GAAAGAATCA 001120 001121 TGTGACCAGT GACAAAGAGG CTGGGCAGCT GGGTCAGGCA GCAGGGACAG CGACTGAGCT GGGGGGACTA CAGTGCTGTG 001200 001201 CTCCTCTGCA CCCGTGCTGG GATGTCTGAG GCCAAGCTGA CACTGGCCCC CCACAATCCC TTGGGGCTGC TCCTCCTCAG 001280 001281 GGAGTGGCTC TCCGGGTTTC CTGCTTGACT CCTGCTGCTC TTGTGTTGAA GGGCCGTCTC TGGGCAGCTC CCCCTGGCCC 001360 001361 CTGGCCAGAG AGCCAGGCCC TGTCAGGCAC GCACATGGAG GATGAGGGAG GTGCAGTTGT TTTCACAGGT GCAGACTCTA 001440 001441 GAGGGACCCC ACGTGGACTC TGTGGCTTCT GCCCCGACGC ACTCGCGGGA GGACACAGCT CTGCCCGGAA GGGAGAGTGC 001520 001521 TGAGCTGGGT CCCTGCTGCT CATCTCTGTG GCATCACCCT GTCAGTCCTT CCCTGTCACA CATATGTTCC GCAAGACCTG 001600 001601 CCGTCAAATA TTTGCTCAGT CAAACATTTG TTGAATGGGA TGAGCCATGG AGGTTCAGAC AGATGCCGTG ACCTGAAGTG 001680 001681 TCAAATGAAG GGATGCGTGT GTGATGGCCT TCACCATTTA TATTGTTTTA AACTTGCTAA GCACTAGTTA AAATAAAAAA 001760 001761 GCCAACACTT TTCTTTACAT TTTTACTCTC TCTCTTTCT |
Predicted Small Protein
Name | NONHSAT013043_smProtein_389:541 |
Length | 51 |
Molecular weight | 5781.8019 |
Aromaticity | 0.16 |
Instability index | 63.876 |
Isoelectric point | 10.5317993164 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0604427957369 |
Amino acid sequence | MRRPFSCWLGVRLWELSPVYGGSKGLASGTWFIYLAGLHPLISYLQRKRL |
Secondary structure | LLLLLEEEELEEEEEELLLLLLLLLHHHHHHHHHHHLLLHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLL |
PiMo | oooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiii |