NONHSAT013291

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT013291

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1403 nt

Genomic location

chr10+:50329703..50359313

Exon number

4

Exons

50329703..50330321,50343922..50344126,50349298..50349412,50358850..50359313

Genome context

Sequence
000001 gcgtgagcca ccatgcccag ccctcaacat acgaattttg agaggacaca atttaaccca ttacTGAGCA CCACAGAAAT 000080
000081 TCTCATGAAA GGTCTGTCAG GACTCCACCA TTTTGACATG ACCCTCGTTT TCCCCCACAA TCCCCCTTCC AGGACCCCAT 000160
000161 TGTGATGTCA CATTTCAGGT CAAAGCATTA CATGTTATTC TTAACACCTG CCACTTCTCT CTTCCCACCT CTATCTGCCT 000240
000241 TATTGAACTT CATCTTTCCT TCATTCTCTT CAACTTCCAC TTCTTCTTGT ATGGTCCTGT TGATGCCATC TTGTTTCCGT 000320
000321 CCCCAGACTC ATCATCTTTA CCCTCTGTCA ACTGAGTTCC CACCCTGGTT CTCTCTCAAG ATCTTCCTCT CATAGCTTTC 000400
000401 ACCCTTGGTA AACAATGAGG ACACATCTCA AAAAGAATGA TGTAATTTAA TTGCCTTGAG TTGGCTGGGC CATCATCTAT 000480
000481 TATAAAGTGC TCTTAAAATT AAAGCTAATT TAATTCTGAA GAACTAAGGA TTAAGAAGTT AAGAGCTGGG GTTCTTACAA 000560
000561 TATGGCTTGC AGACTACAAG TGTGAACTGA GGAGGTCCCC AAAGTCACTT CTTACTAAGT TCAGATAGGT GATGGATTGA 000640
000641 AAATAATCCC AATATTCCAC AAGCAACATC AACATCCCCC ACACACCCAG CACCGAGGAA TACCCTCCTC TCTAGAATGT 000720
000721 GAGGCCACTG TGTGGAGGAA GACACCACGG TGCTCTACTG AGCCATGAAA GTCACGCCTG ACCTAAACAG AAGACTACGT 000800
000801 CCCCTGGCTA AAAGAGGAAA TAGTtgaaag cggtgtaaat ggctcttatc tgaaccacaa tgaattcaca tattcaagtt 000880
000881 ggcttcttcg gaaatttcag gccacaaatg gcagtgatgc gaccaggagc agtaacacgT GCCACTTCCA TCCGGACAGA 000960
000961 AGGAACCCAG GTCAAGGCTG ACAGGAGGAG CAGGAGCCGT CAATGAGAGC AGACCTCAGA AGCCAACGGA GGTGAGAAGA 001040
001041 GCACCATCCA CAGCCCCATC CTCTGAATGC TGTGGGAAGA AGTCCACAAA ATACCACCCC TTGGAGTCAG TCAGTAGTAG 001120
001121 AGCCCTTGCT GCTGGCTGCA AATACCCCAT CAGAACATGT TTGGGGTGAT TCTTGGACCT GGTTTCAATT TCTTTTCTGC 001200
001201 CAGTCAGCAG TTGTGCTTGA CTCACAATTT GTTGCCATCT CTTGAATTAA ACTCAGGAAA CAGGATAAAG ATCAGAACCA 001280
001281 CATTGTAAAA GCTTCCTTAT GGTTCATTTT TTGCTGAGAT AAATAATGAG CAGCTCTGAT CCATGTCTCT GGAGAGCTCA 001360
001361 GAGCACACTA CCAGGAGCTC CTAGCCACAG GGTGAGCACA GGT
[back to top]

Predicted Small Protein

Name NONHSAT013291_smProtein_164:394
Length 77
Molecular weight 8747.234
Aromaticity 0.171052631579
Instability index 80.2578947368
Isoelectric point 9.30230712891
Runs 11
Runs residual 0.00332728372656
Runs probability 0.0697756580109
Amino acid sequence MSHFRSKHYMLFLTPATSLFPPLSALLNFIFPSFSSTSTSSCMVLLMPSCFRPQTHHLYP
LSTEFPPWFSLKIFLS
Secondary structure LLLLLLLEEEEEELLLLLLLLLHHHHHHHHLLLLLLLLLLLLEEEELLLLLLLLLLEELL
LLLLLLLLLEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooo
oooooooooooooooo