NONHSAT015216
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT015216 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3959 nt |
Genomic location |
chr10-:81805989..81838949 |
Exon number |
5 |
Exons |
81805989..81808934,81813152..81813342,81815672..81815882,81820546..81820689,81838483..81838949 |
Genome context |
|
Sequence |
000001 ACGCCTCACC GCGAAGTAGC CCAGCCCCAG GACTGTGACC AGAGAGGGCA AGGGTCTTGC TGGACGGAAA TAGGCGGTAG 000080
000081 CCGCATTGCT GGCCTCCGAC TTCACCATCC TCTTGAAAAA CCCAGACACA GAGTTGGCTG GGAGCTCCCC AGCCGTCCCC 000160 000161 GCCCCCATAT AAGAAAAGCC TGGCTAGCCG GTTTCTCAGG GCCCTGGGCG CCCGCCCAAG ACCCTGGCGG ACCAGTATGC 000240 000241 TTGCTCTCAT TGCGGAGTCT GGTCCCCTCC CCTCCGCTCC TAGCGCGCGG GAGTCGGGAT TGTGCTTGCA CGACTTCCCC 000320 000321 CGGCCCGCGG CCTGTGAGCC CAGGTCCTGG GGTGAACCGA GCGCTCGCTC GTTCGTCAGA CCGTAGCGCT CCAGCGGCTG 000400 000401 TCCTTACTGT GTAGTAGCCA AAGCTGAGGG TGATGACTGT GAACCAGAAC AGACTGCCTC GCTGAAAAGT CACTTGGAAC 000480 000481 TCTTCTGTGG CATCTGAAGC AGATGGACGA AGCCAAGAGG GCCGAGAGTA TCTCAGCACC TAGAAATGGA CAAGGCTGGT 000560 000561 TATTAGAACA AAGATTTCGC AGGTGGTGAG TCTCAAAGGC GAAGCTGAAT GAGGCAAGAA TCTGCATCAA AGAGCCCTGG 000640 000641 AAGCAATCAT GGCTCAACTG TGATGCCTTT AGAACATGAA GTCCTCCAAG AAGATGCCAT AGGAATGGCC TCCATCCCAG 000720 000721 GGCCTGGAGA GCAGCCAGAG ACAAGAAGAG TAGCCCAGGA GGGCACTGGC AGTCAGTGCT ACACTGTGGC CTgtcagtct 000800 000801 cagagccagg atttaatcac tgGATCTCCC ATTAACCAGT CATAATGAAG TAAGAACAAG AAGATGGGGA AGAGGAAGTG 000880 000881 TAAAACCGTG GCTTAAATTT GCCAAGGATA AGCTGAGTGT ACTTCAGCAG TCATTTGCAC AGAATCCTTA TCCTAATTTT 000960 000961 ACAACCAGGG AAAAACTGGC TGGACAGTCT CTTGTCCTGT GTTTGTAATT GATAACTGGT TTCAAAATAA AAGCCAGACC 001040 001041 ACCACTTAGA GAGAGACACA GAATGTTCAC TGCCAGGGAA CTGCATGATT CCTCTGCCAA AGGCCACCCA TTTACAAGAA 001120 001121 TCCAGGAAAA CCAGGTGGAA TCTCCCAATG ATGACCCTGA GCAGAACTTC TTGTACCCAG GAAGTTCTAC TGGGTGGAGC 001200 001201 TGGCCACTCT TCCGTGGAGA CACAGGGGAC TCCCAATTAA CATGATGGCT CAAATAACTG TAGCCTTATG GATTAAAAGG 001280 001281 AAACTAAGCT GTGATTTGGA GTATCCAGGT GATACAGAAA ATGGCCCTTG TCGATGTAGA TCAGCATTAT TTCCTTATCC 001360 001361 TTCTGCATCT CCTCCTCAGT ATTCTGAAAG GGACAAGCCT GAGATGGGGG AAAGCCAGCA TGCAAGGCCC TCCCCTTTGT 001440 001441 GCTGTGTTCA TGGTGTGCAC GGAGAGAGGC AGCAGCAGGA GGAACAGAAA GGTTATTTTC TTTACTGACT CTTTCAAGGA 001520 001521 CATCAGCAGA ATGGTTGGGA ATGTCATCAT GAGCAGCCTC AGCCTCAGAA TTACCAGGAG AAGCTGGTCT TCCAGGATCA 001600 001601 GGTTCTAATG TATATGAGTC ACAGGATTTA GGGAAGCAGG CACTTTCCCT TCAGTCCCAG CAGCATGGTT GATGTTCCCA 001680 001681 AGTAATGGAG AGTCCCTGTG CTCTCAGTTG TGGCACACAC CTTTGCAAAT AGTGATCAGA TCTCCACAAA CGCCTCTTGG 001760 001761 GTAAGATATG CAGCAACATA GCTGGCTGCA GAGCAACCCA GTTCCCAAAT CCAGCAGCTC TTGGATGAGA AGTCTGCAAG 001840 001841 TGTTTACTGC TGGGACCAGG ACTGTGTTTC TAGGAAATGG TGCTAGGCTT CAGAGAGCAT CATCCACAGG TCATCCCACA 001920 001921 ACCATCCACA CAGAAGCCTG AGGAAAAGGG CTCTGCAGAG CTTGCACATA AAGATGCTGA ACTCAGGAAG GCTCTGTGAG 002000 002001 CTGCTGGTCT CTTCTGGTAG GGCAGCAGTG TCCTGAGAAG GTGGAGCTAG AGTATGGAGA ACAAAACTAA CAAGCACCAA 002080 002081 GGCAGCAAGC AAGGCAACCC CCAAATGACA GCAGTTGCCA AATCCAAAGC AATCTGTGCT TCAGAAGACA GAGGCTCTGC 002160 002161 ACAGTCCCTG TCTCAGACAT TGTCTCCTCC TTAGAAGATA CCTAACAAca gcactgtggg aggctgaggt gggtggatca 002240 002241 ccaggtcagg agatcaagac catccttgat ctttagtaga gacggtgaaa cactgtctct actaaaaaat acaaaaaaaa 002320 002321 attagctagc cgtggcggcg ggcacctgta gtctcaacta tttgggaggc tgaggcagga gaatggcctg aacccgggag 002400 002401 gcagagcttg cagtgagctg agattgcgcc actgcactcc agcctgggca acagagtgag actccatctc aaaaaaaaaa 002480 002481 aaaaaaaaaa aaaaaaaaGA TACCTAACAA GCAGTACAAG AATATGAAGG ACCCCACTGC CCAGACTTTG TATGGAGGGG 002560 002561 TGTCTAAGGT GGCTACAGCA AAGCTGTCAT CTCCATCGAC CGGGACAGCA TCTCCAGCCA TGATGTGTGG CCTGCTGGAA 002640 002641 CAGCAGCCAT GTGTCCTTTC ACAGACAGCC CACCAAAGCT CTGACTGTGA AGGACATCCC AACATCAGCC TAGCCTGCAT 002720 002721 ACACTTAAGG CATAGAATCA CCTGAGGCTT CTCCGTTGAA GACAGGGACT CCCGATGGAG TTGCAGCCCC AGCTTTGCAC 002800 002801 TGTAAAGAGC CCCAGGGGGC TTCTGTGCTA GAGCAGGTGT GCAGACCCCT CCTCACCCCC TTCACTGAGA GCTGCTGCCT 002880 002881 GGAACCAGTG TTTTGACTGA GTCACCTCTG GACGTGGGCC CACAAGATCT GAGAGTGCCC AGACGAGAAG TTGAATGCCT 002960 002961 TGTGTTGACC TGAGTGTTTG GAAAAAAGCC CCAAACTTTG AAACAATTTT CATAATTTTG AGCTTCAGGA TGTGGAATCA 003040 003041 CTTCTCAAGT ATTCTGGAGT TCTGTCCATC AGAGCGGGTC CTGCCAATGC TGCCCTGTGC AGCGCTTCAG GCTGCATCCC 003120 003121 TCCCACTAGG GGGCGCCTTT CACATAGTGG CGCCTGCCTT CTAGAGGAGC AACATTTCCT GAACTGCAGG GTTCCCTCGG 003200 003201 GGCTTTGTGT AAAACACATC CACTGCATAG AATTTGTGTT ATTTCCATTT TGTTTTCTTG ACAATATTTA ATTAATTACA 003280 003281 AAATGATGTA TGTTATGATA GTTTAAGCAA TACAGAGAGT AACCAAACAA AAGCTTGGTC TTTTATTCTC GCACTCTGAA 003360 003361 TTTACAGTCC TGAAAACTCT AAACTCATCA TATAATCTAT ATTGTAAAGA CTTTGATAAt cccttccctt gcctttcctt 003440 003441 tccccattcc cccttcccct tccttcTTCT ACATTGTATG ATGTTTTTCA TATTTACATT CTAACCAATT GTGTCATGTG 003520 003521 ATACTAATTT GCAGAATAAA GCATGTTTTG CACATATTTC CAAGTCATAT AACATGCAGA CATACTTCAT TTTGTAAATA 003600 003601 TCTTCCTTCT CTTACTATAA GATTGAGAAT AGGTAAAGAG Caactctcca atgcaggtga tgagtgtgat ttgcactatc 003680 003681 actttggaca gccaattgga atatttattg aagtcataga tgcccagcaa ttctgttact ggatgtgtct catagacaaa 003760 003761 ctcttggaca tTCTTATAGA ACACTGAGCC CAAAGAAGAC ACATCATATA ATGTAAGAAG CTAGGACAGC TTAAAAAAAA 003840 003841 AAGGCCTAGA TCTGTGTAAT TGTGTGAGTG TTCTCGGACA TACTGTTTGT AAAAAATCGA GTTATTGAGT AGTTTGATAA 003920 003921 TATGATAATC ATGAAAATAA AGGATAAAGC AGCGAGTAA |
Predicted Small Protein
Name | NONHSAT015216_smProtein_1241:1507 |
Length | 89 |
Molecular weight | 10060.2806 |
Aromaticity | 0.0909090909091 |
Instability index | 63.8056818182 |
Isoelectric point | 6.26458740234 |
Runs | 9 |
Runs residual | 0.0290909090909 |
Runs probability | 0.0192839898722 |
Amino acid sequence | MMAQITVALWIKRKLSCDLEYPGDTENGPCRCRSALFPYPSASPPQYSERDKPEMGESQH ARPSPLCCVHGVHGERQQQEEQKGYFLY |
Secondary structure | LLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLEEEELLLLHHHHHHHHLLLELL |
PRMN | - |
PiMo | - |