NONHSAT015216

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT015216

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3959 nt

Genomic location

chr10-:81805989..81838949

Exon number

5

Exons

81805989..81808934,81813152..81813342,81815672..81815882,81820546..81820689,81838483..81838949

Genome context

Sequence
000001 ACGCCTCACC GCGAAGTAGC CCAGCCCCAG GACTGTGACC AGAGAGGGCA AGGGTCTTGC TGGACGGAAA TAGGCGGTAG 000080
000081 CCGCATTGCT GGCCTCCGAC TTCACCATCC TCTTGAAAAA CCCAGACACA GAGTTGGCTG GGAGCTCCCC AGCCGTCCCC 000160
000161 GCCCCCATAT AAGAAAAGCC TGGCTAGCCG GTTTCTCAGG GCCCTGGGCG CCCGCCCAAG ACCCTGGCGG ACCAGTATGC 000240
000241 TTGCTCTCAT TGCGGAGTCT GGTCCCCTCC CCTCCGCTCC TAGCGCGCGG GAGTCGGGAT TGTGCTTGCA CGACTTCCCC 000320
000321 CGGCCCGCGG CCTGTGAGCC CAGGTCCTGG GGTGAACCGA GCGCTCGCTC GTTCGTCAGA CCGTAGCGCT CCAGCGGCTG 000400
000401 TCCTTACTGT GTAGTAGCCA AAGCTGAGGG TGATGACTGT GAACCAGAAC AGACTGCCTC GCTGAAAAGT CACTTGGAAC 000480
000481 TCTTCTGTGG CATCTGAAGC AGATGGACGA AGCCAAGAGG GCCGAGAGTA TCTCAGCACC TAGAAATGGA CAAGGCTGGT 000560
000561 TATTAGAACA AAGATTTCGC AGGTGGTGAG TCTCAAAGGC GAAGCTGAAT GAGGCAAGAA TCTGCATCAA AGAGCCCTGG 000640
000641 AAGCAATCAT GGCTCAACTG TGATGCCTTT AGAACATGAA GTCCTCCAAG AAGATGCCAT AGGAATGGCC TCCATCCCAG 000720
000721 GGCCTGGAGA GCAGCCAGAG ACAAGAAGAG TAGCCCAGGA GGGCACTGGC AGTCAGTGCT ACACTGTGGC CTgtcagtct 000800
000801 cagagccagg atttaatcac tgGATCTCCC ATTAACCAGT CATAATGAAG TAAGAACAAG AAGATGGGGA AGAGGAAGTG 000880
000881 TAAAACCGTG GCTTAAATTT GCCAAGGATA AGCTGAGTGT ACTTCAGCAG TCATTTGCAC AGAATCCTTA TCCTAATTTT 000960
000961 ACAACCAGGG AAAAACTGGC TGGACAGTCT CTTGTCCTGT GTTTGTAATT GATAACTGGT TTCAAAATAA AAGCCAGACC 001040
001041 ACCACTTAGA GAGAGACACA GAATGTTCAC TGCCAGGGAA CTGCATGATT CCTCTGCCAA AGGCCACCCA TTTACAAGAA 001120
001121 TCCAGGAAAA CCAGGTGGAA TCTCCCAATG ATGACCCTGA GCAGAACTTC TTGTACCCAG GAAGTTCTAC TGGGTGGAGC 001200
001201 TGGCCACTCT TCCGTGGAGA CACAGGGGAC TCCCAATTAA CATGATGGCT CAAATAACTG TAGCCTTATG GATTAAAAGG 001280
001281 AAACTAAGCT GTGATTTGGA GTATCCAGGT GATACAGAAA ATGGCCCTTG TCGATGTAGA TCAGCATTAT TTCCTTATCC 001360
001361 TTCTGCATCT CCTCCTCAGT ATTCTGAAAG GGACAAGCCT GAGATGGGGG AAAGCCAGCA TGCAAGGCCC TCCCCTTTGT 001440
001441 GCTGTGTTCA TGGTGTGCAC GGAGAGAGGC AGCAGCAGGA GGAACAGAAA GGTTATTTTC TTTACTGACT CTTTCAAGGA 001520
001521 CATCAGCAGA ATGGTTGGGA ATGTCATCAT GAGCAGCCTC AGCCTCAGAA TTACCAGGAG AAGCTGGTCT TCCAGGATCA 001600
001601 GGTTCTAATG TATATGAGTC ACAGGATTTA GGGAAGCAGG CACTTTCCCT TCAGTCCCAG CAGCATGGTT GATGTTCCCA 001680
001681 AGTAATGGAG AGTCCCTGTG CTCTCAGTTG TGGCACACAC CTTTGCAAAT AGTGATCAGA TCTCCACAAA CGCCTCTTGG 001760
001761 GTAAGATATG CAGCAACATA GCTGGCTGCA GAGCAACCCA GTTCCCAAAT CCAGCAGCTC TTGGATGAGA AGTCTGCAAG 001840
001841 TGTTTACTGC TGGGACCAGG ACTGTGTTTC TAGGAAATGG TGCTAGGCTT CAGAGAGCAT CATCCACAGG TCATCCCACA 001920
001921 ACCATCCACA CAGAAGCCTG AGGAAAAGGG CTCTGCAGAG CTTGCACATA AAGATGCTGA ACTCAGGAAG GCTCTGTGAG 002000
002001 CTGCTGGTCT CTTCTGGTAG GGCAGCAGTG TCCTGAGAAG GTGGAGCTAG AGTATGGAGA ACAAAACTAA CAAGCACCAA 002080
002081 GGCAGCAAGC AAGGCAACCC CCAAATGACA GCAGTTGCCA AATCCAAAGC AATCTGTGCT TCAGAAGACA GAGGCTCTGC 002160
002161 ACAGTCCCTG TCTCAGACAT TGTCTCCTCC TTAGAAGATA CCTAACAAca gcactgtggg aggctgaggt gggtggatca 002240
002241 ccaggtcagg agatcaagac catccttgat ctttagtaga gacggtgaaa cactgtctct actaaaaaat acaaaaaaaa 002320
002321 attagctagc cgtggcggcg ggcacctgta gtctcaacta tttgggaggc tgaggcagga gaatggcctg aacccgggag 002400
002401 gcagagcttg cagtgagctg agattgcgcc actgcactcc agcctgggca acagagtgag actccatctc aaaaaaaaaa 002480
002481 aaaaaaaaaa aaaaaaaaGA TACCTAACAA GCAGTACAAG AATATGAAGG ACCCCACTGC CCAGACTTTG TATGGAGGGG 002560
002561 TGTCTAAGGT GGCTACAGCA AAGCTGTCAT CTCCATCGAC CGGGACAGCA TCTCCAGCCA TGATGTGTGG CCTGCTGGAA 002640
002641 CAGCAGCCAT GTGTCCTTTC ACAGACAGCC CACCAAAGCT CTGACTGTGA AGGACATCCC AACATCAGCC TAGCCTGCAT 002720
002721 ACACTTAAGG CATAGAATCA CCTGAGGCTT CTCCGTTGAA GACAGGGACT CCCGATGGAG TTGCAGCCCC AGCTTTGCAC 002800
002801 TGTAAAGAGC CCCAGGGGGC TTCTGTGCTA GAGCAGGTGT GCAGACCCCT CCTCACCCCC TTCACTGAGA GCTGCTGCCT 002880
002881 GGAACCAGTG TTTTGACTGA GTCACCTCTG GACGTGGGCC CACAAGATCT GAGAGTGCCC AGACGAGAAG TTGAATGCCT 002960
002961 TGTGTTGACC TGAGTGTTTG GAAAAAAGCC CCAAACTTTG AAACAATTTT CATAATTTTG AGCTTCAGGA TGTGGAATCA 003040
003041 CTTCTCAAGT ATTCTGGAGT TCTGTCCATC AGAGCGGGTC CTGCCAATGC TGCCCTGTGC AGCGCTTCAG GCTGCATCCC 003120
003121 TCCCACTAGG GGGCGCCTTT CACATAGTGG CGCCTGCCTT CTAGAGGAGC AACATTTCCT GAACTGCAGG GTTCCCTCGG 003200
003201 GGCTTTGTGT AAAACACATC CACTGCATAG AATTTGTGTT ATTTCCATTT TGTTTTCTTG ACAATATTTA ATTAATTACA 003280
003281 AAATGATGTA TGTTATGATA GTTTAAGCAA TACAGAGAGT AACCAAACAA AAGCTTGGTC TTTTATTCTC GCACTCTGAA 003360
003361 TTTACAGTCC TGAAAACTCT AAACTCATCA TATAATCTAT ATTGTAAAGA CTTTGATAAt cccttccctt gcctttcctt 003440
003441 tccccattcc cccttcccct tccttcTTCT ACATTGTATG ATGTTTTTCA TATTTACATT CTAACCAATT GTGTCATGTG 003520
003521 ATACTAATTT GCAGAATAAA GCATGTTTTG CACATATTTC CAAGTCATAT AACATGCAGA CATACTTCAT TTTGTAAATA 003600
003601 TCTTCCTTCT CTTACTATAA GATTGAGAAT AGGTAAAGAG Caactctcca atgcaggtga tgagtgtgat ttgcactatc 003680
003681 actttggaca gccaattgga atatttattg aagtcataga tgcccagcaa ttctgttact ggatgtgtct catagacaaa 003760
003761 ctcttggaca tTCTTATAGA ACACTGAGCC CAAAGAAGAC ACATCATATA ATGTAAGAAG CTAGGACAGC TTAAAAAAAA 003840
003841 AAGGCCTAGA TCTGTGTAAT TGTGTGAGTG TTCTCGGACA TACTGTTTGT AAAAAATCGA GTTATTGAGT AGTTTGATAA 003920
003921 TATGATAATC ATGAAAATAA AGGATAAAGC AGCGAGTAA
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Predicted Small Protein

Name NONHSAT015216_smProtein_1241:1507
Length 89
Molecular weight 10060.2806
Aromaticity 0.0909090909091
Instability index 63.8056818182
Isoelectric point 6.26458740234
Runs 9
Runs residual 0.0290909090909
Runs probability 0.0192839898722
Amino acid sequence MMAQITVALWIKRKLSCDLEYPGDTENGPCRCRSALFPYPSASPPQYSERDKPEMGESQH
ARPSPLCCVHGVHGERQQQEEQKGYFLY
Secondary structure LLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLEEEELLLLHHHHHHHHLLLELL
PRMN -
PiMo -