NONHSAT016121

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT016121

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1464 nt

Genomic location

chr10+:104209577..104216046

Exon number

2

Exons

104209577..104210087,104215094..104216046

Genome context

Sequence
000001 tttttttttt tttttttgta gagacagggt ttcgccatgt tgcctaggct ggtctccaac ctggtctcct gggctcaagc 000080
000081 gatccgcccg cctcggcctc ccacagtgct gggattccag gcgtgagcta ccgcgcccgg ccTATTTACT TTTCTTACTA 000160
000161 AGCTGGGGAT CACCGTCGCC CTCGGCTTGG CAGGAAGGCG GGGGTAGGGG AGCGGTGGGA AAGGGGGGTG GGCGACGACT 000240
000241 CTGATAGAGG GAAAAGAGGA AGGGAAAGTT GGGGCTTACT GCAGGGCAAG CTCCTTAGGA GAAGGTGGGG AGGAGGAAGG 000320
000321 AGGGAGGTCC AGGCCCTTCT TCCATCCCAC GTCCTCCACT TCCCAAGGTG CAAGAAGAAA AGAGGTACAG AACACCCAGA 000400
000401 GGTGCCCTCG ATTCCGTCTT GCACTTGCCC TTCTCCCACC GTCCAGCAAT AAAGCGAGAG AAACAAGTGC AGGAAACTGG 000480
000481 CCGGCAGTCA TGGGAGAAGC CAAAAAGACA Ggagttcagt ggcatgacca gggctcactg caaccttgat ctgggctcaa 000560
000561 gtgatcctcc tacctcagct tcctgagtag ctaggaccac aggtgtgcac caaccacacc cgactaattt ttgtagagat 000640
000641 gagatcccac tatgttaccc aggctggtct tgaactcctg ggctcaggtg atcatcctgc cttggcttcc caaagtactg 000720
000721 ggattatagg cttgagccac cgtgcctggc cTGTGATCAG AATTCTCATT TTTTTAGTCA CTAAaaatgc tggggggcac 000800
000801 tccattctcc attatgtgat tagttcacat tgcatgcttg tatcaaaaca tcatatatac cccacaaata tatacaAAAA 000880
000881 ACTTTAAAAT TTTAAGTATT AATTGCTCAG GAAAAAATTA AAATGCTGGG GTGCTGAAAT CTCAAGGGCC CCATTACAAA 000960
000961 ACTCCTTAGG AACCTCGCCC TCTCTCTGCT GTAAGGACTG GTTCCAGAAT GAGAGAATTT AAAAGACATT Ccccccccaa 001040
001041 aatgttcata atgtcacccc ggaaacctgc gaatatgtta tattacatga ccagggagaa gtaaggttgc agatggcagt 001120
001121 aaggttgcta atgggctgac cttaagataa ggagatgatc ctggattatc tgggtggacc caatgtaatc acaagggtcc 001200
001201 ttaactgtgg aatagtgagg tggctgagtc agaggcagag tgatgcaatg actgaaagac ttaaccagcc atcaccggct 001280
001281 ttgaatacgg aagacggtca tgagccaggg aatgcaggca ggctctggga gctgaaaaaa gcaagaaaat ggattctccc 001360
001361 ctggagcctc cagaagggat gcggtcctgc caaccccttg tcagtgagcc atttcagatt tctgacttcc aggactgtaa 001440
001441 gaaaataaac ttgtcttgtt ttca
[back to top]

Predicted Small Protein

Name NONHSAT016121_smProtein_1154:1447
Length 98
Molecular weight 10981.559
Aromaticity 0.0721649484536
Instability index 52.7206185567
Isoelectric point 10.2792358398
Runs 15
Runs residual 0.0231004200076
Runs probability 0.0424130012365
Amino acid sequence MILDYLGGPNVITRVLNCGIVRWLSQRQSDAMTERLNQPSPALNTEDGHEPGNAGRLWEL
KKARKWILPWSLQKGCGPANPLSVSHFRFLTSRTVRK
Secondary structure LEEELLLLLLEEEEELLLLEEEELLLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHHH
HHHHHHHLLHHHHLLLLLLLLLLLLEEEEEEEEEEEL
PRMN -
PiMo -