NONHSAT016512
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT016512 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1824 nt |
Genomic location |
chr10-:118998545..119000515 |
Exon number |
2 |
Exons |
118998545..118999684,118999832..119000515 |
Genome context |
|
Sequence |
000001 GCTGCGCAGG AGGGGCTGCC GCCTCCCTGT CCCCGCCTCG GCCGCGGCCG CGCCTCTTCC CCGGACCCAG CGCGTGGCCG 000080
000081 AGTGCCTTGG GGACCCAGGC CTGGGGAAGA GGCAGGGGCG CAGAGGGAAA GAGGTCAGAG AGCCTGGACG AAGAGTGAAG 000160 000161 GGCCAGGGAC CAAGGCGAGG AGGCACGGAC CAGGGCTTTC TTGTGGCTCC AAGTGGTGGC TCGAGCTGCT TTGAATAAAT 000240 000241 CACGTGGCTC TTTGAGCCTC AGTGTCCCTG AAATGGGCCG TGAGGACGGG AATGATGGCC GCGGGGTGAG ATCGCCAGGG 000320 000321 GTGACAGGTG CTGGGAGCCA GGGACAGGCT TCCCTTTCCT GAAGAAGCCA CCCTTTGCAC CCACCATCCC CTCCCCTCTC 000400 000401 CGACCTCTGC AGCCCGATGC GGGGTGCCAC TCGGAGGAGC CTTTGAGCCT TGGGCATCCT CAAGCTGGTG ACTTGGAAAC 000480 000481 GGGGGGGGGA AGGGGACACT TTTCAGTGTC GCCCTATGGT GGGAGTTGGG GAGGTGAGGG TCCCAGGTCT CAGAAAGTGG 000560 000561 GAGCAGTGGG TTTGGGCCTC TGGGGCCACC TGAGCAGGGG ACCCTGGAGG CTAGGTGAGT ACACCTGGCC TCAGAGAAAG 000640 000641 GGCTAGGGGG CGGGCTGTGG GCGGGGCAGC AGGCCTAGGC CCTGTATAAG CAAAGGAGAA ACAAACAGAT GCCCTCTGAC 000720 000721 ATCGCTGGAG CTCTGCAGGC CCTCCGAGGG GACCGTGGGA GCAAGAGCTG TTTTCTTGAA AAGCTACCTA GAATAAATGT 000800 000801 TACCCTGTCA CAGTCTCTTA GCAGAAGAGT GGGCTTGTTT TATTAATGTT AGCTTGTTGA CAGCAGGAGG CCACTGAGAA 000880 000881 CAGCAGTGTG ATGTGTGGCT GCCCCCGCTC TCTCCACCTC CCTACTCCCT TGCAGAGACC CCCTGTGCTT CTCATTGCTA 000960 000961 CCCCATGTGT GAGAAGAGAT GGTTGAATAG GTAAGTAGGT CAGGAACATG GGTCTCCAGG ATGTCACAGG ATGTGCACAA 001040 001041 CTTAAACATT AAACAGGGAG GACAGAAGGA AAACCACTTA GGAGGAGGAA GCAGATGGCA GAGAGCCGTT TAAGATGGCA 001120 001121 GGAGGGTATC ACTCAGGGAG TGCCCCAGAG TGCTTGCTCT GGAGTTTCAG AACCCAAGGA TGCAGACTCT ACCCCAGGGA 001200 001201 CCACATGGGG ACAGAGAGgc attatggtaa agggtgcctg ccaggatgcc caggtcccag tctgctactt ccttgactgg 001280 001281 tggccttggg ctggttatgt atcctctttg tggcttagtt tcgccatctc tggaatgggg atactcactg gacctactgc 001360 001361 agcgtggttg tgagaattcc aggggaatgc ataggcagct cttagcacag tgcctggcac aaagtgagag ctccgtaagt 001440 001441 gccggCCCCt cattcatgcg ctgaatatgt gttgagctct tactacgtgc caggcactat ggttaatgct ggggagacag 001520 001521 taaagcctag acaaatccct gcTGACATTC TGACCTGATA GCAGCATCAT AGCAGTGAAC ACTGGAAGCC ACACCAAACT 001600 001601 CCAGCCCAGC CAGCTGGATG TAGATGGCTC CAGGGACAAT GCCAGCCCGG CGTTCCCGCC TCCGGATCAC TGTCACCACC 001680 001681 CCTAGAGCAC TATGGCCTAT AACAGACttt ttgttgaaac cccctaaaaa atgtttaaca atatgtttgc cttacacatt 001760 001761 ttcaagttgg catctaaaat gagtttttta atcatatatt taaatagggt atattgtatt tatt |
Predicted Small Protein
Name | NONHSAT016512_smProtein_1094:1372 |
Length | 93 |
Molecular weight | 9953.2015 |
Aromaticity | 0.119565217391 |
Instability index | 49.6445652174 |
Isoelectric point | 4.65997314453 |
Runs | 9 |
Runs residual | 0.0373787926181 |
Runs probability | 0.0673712928615 |
Amino acid sequence | MAESRLRWQEGITQGVPQSACSGVSEPKDADSTPGTTWGQRGIMVKGACQDAQVPVCYFL DWWPWAGYVSSLWLSFAISGMGILTGPTAAWL |
Secondary structure | LLLLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLLLLLEEEEEE LLLLLLLHHHHHHHHHHHHLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iTTTTTTTTTTTTTTTTTTTTTTooooooooo |