NONHSAT017262
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017262 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
8331 nt |
Genomic location |
chr11+:507275..515605 |
Exon number |
1 |
Exons |
507275..515605 |
Genome context |
|
Sequence |
000001 gcggggacta ctgggcgggg ctcggcgcgg gggcggggcc tggcgggagt agtctcgggg tcggggcggg gcccggcggg 000080
000081 cggggctcgg ctaagcacag tcttggcgca gcggcggggc ctggtggggc gtggctcggt gaggGAGGTC TCGCTTGGGG 000160 000161 GCGTGGTCTC CCCCAGTAGG CGGGGCTTGG TGCCGGGGGC GGGGTCTGGC GGGCGCGGGC GCGTGTGCGT GTTGTGGGCC 000240 000241 TCGCACTGGC ACGCAAGTCT CAGCAATTCC TGAGAATCCT CGGAGGAAGA GGCCGGGGCC CGGTGCGGCA GCGCCTTGGG 000320 000321 GGCGGAATCG CAGGCGCGGG TCGGGCCTTG CTggggcgcg gggcgcggcc cccggAGAAA GCGGCCGCCT CGGGACAGGA 000400 000401 GGGACCCGGG AGAAACCCCC CTGGGGCGGC TCCGCATGTC GGGGTCGCGA CTCTAGGCGA CCTTGGTAGA GGGGCTCGTT 000480 000481 TGCGCCGAGC TCGCGACCCC CGAGGGAGCC ACGGCCCCGT GAACCACGCT GCCCGTCCTG GCCACTGGCT GCCGCCTTTG 000560 000561 TTTCGTGGGA CCCCAGCCCG CAAGGCCTGC GGAGCCGCGG CCTCGTCCCG AGTGTTCTGA GCGCGGTCCG AGCTGCTCCT 000640 000641 GCGTCCACTC TGCTGCCGAC ACCCGAGCGT CGCCTGGAGC CCTGGCACTG AGGGGCGCAG GCCGAGTTCC AGACCAGCCT 000720 000721 GGGAAACGCA AAGCGACCCC ACCTCCACAA AAGTGGGTTT TCTTTAAGTT TTTGACTAGT CCGCAATTCA CAGAATTGAC 000800 000801 ATTTTGGCAG ATGAAGATTG CAAGTAAGGA AACTAACGGT ATCTCAGATT TGTTCTTTAG CAATTTGCTA AACCTCTCCT 000880 000881 CTGACTGCCT TTATTAGGTA tttgttttcg agacagggtc tcactccact gcttaggctg tactgcagtg gcgcgatccc 000960 000961 agctcgctgc agcctccacc tcccggactc cagtgatcct cccgcctcag cctcccaagt agctggtacc acaggcgcca 001040 001041 gcacgcctgg ctaattgttg tattttatgt agagaagagg tctccctgtg ttgcccagcc tggtcttgaa ttgggctcaa 001120 001121 gtgatcctcc tgcttcagcc tcccatatcg ctggaattac tggcataagc cactacaccc ggccTGATCA TCTTTAAAGA 001200 001201 AGGTGGTTCT ggccgggcgt ggtggctcac acctgtaacc ccaacacttt gggagaccga gaagggtgga tcacctgagg 001280 001281 tcaggagttc aagaccagcc tggccaacgt ggtgaaaccc catctctact aaaaatacaa aaattagcca ggcatggtgg 001360 001361 tgggcacctg taattccagc tacttgggag gctgaggcag gagaatcgct tgaacacggg aagcagaggt tgcagcgagc 001440 001441 ctagaccaca ccattgcact ccagttcggg caacaagatg aaactctggc tgggcgcggt ggctcacacc tgtaattcca 001520 001521 acactttggg aggccaaggc aggcagatca cctgaggtca ggagttcaag accagcctgg ccaagatgat gaaaccccat 001600 001601 ctctactaaa attacaaaaa cttagccagg catggtggtg catgcctgta atcccagcta ctcaggaggc tgaggcagga 001680 001681 gaaccacttg aacccaggag gcagaggttg cagtgagcca agatcgtgcc actgtactcc agcctgggca acaagagcga 001760 001761 aactccatct caaaaaagaa aaaagaaact ccgtctcaaa aagaaGGTGG TTCACACACA CACACACACA CCCCCAagaa 001840 001841 agctcagggc tggaaggcag ccaacctggc tgtgaccctc atcctgcaca cgtgagcttg gtgaccagta gctgattctt 001920 001921 taactctcta agctttggAG TCTGGATGTG AGGTTTAGAA TTCATGACAA GAAGCTGGAA GGATGCCGCC AGTCTGACTC 002000 002001 CTGGACTGGT TCTCTTGACA TCTTTGCAAA AGCTGCTGAA ATGTTCTGGT TTCATTTCAT TCTTTTCTTT GCCATGATCT 002080 002081 CTTAGATTTG TTCGTGGCAA TTCTCATAAG AGTGAAGAAA ATGTTTAAAA TGGCTGTTGG GCTCCCTTTT GTGACACCTT 002160 002161 GTGGGGAAGG TGCCCAGGTA TGTATAGGTG CTGAGCGCAC GGCCAGCATG GTGTCTGTGG CCGGGCCTCC CTCCTGGACA 002240 002241 GTGCGGCCAC AGCCCCTGAA AGGTATGTCT TCAtttttat tttattttat tgagatggag tctcgctctg tcgcccaggc 002320 002321 tggagtgcag tggcgcgatc tcggctcact gtaagctccg cctcccaggt tcaagccatt ctcctgcctc agcctcccga 002400 002401 gtagctggga ctacaggcac ctgccaccac gcccggctaa tttttttttt tttttttttt ttgtaatttt aatagagaca 002480 002481 gggtttcagc gtgttagcca ggatggtctc gagctcctga ccttgtgatt cgcccgcctc aacctcccaa agtgcCTGGC 002560 002561 CTTCATTTTT ATTTTTGAAC TTACCTGCCT CACCTCGTTA TGTCTTTATC TTATTTTTAA ACTTACTCAG TTCACCCACT 002640 002641 GTGGAATTGG GAGTATATGG AAGTATTCCC ACCCCCAGTT TTATATACCG CCCCAGAGCT GACCATTCTC GCTCATTTCC 002720 002721 CCGGGTCCTG GCCGACTCGA GTGTGCCTTT CCTTCCGATC CTGCTCCACA CAGATCTGAG GGATGCTGCC CTTTCCTTCT 002800 002801 CCACCTGCCC CTCCCTCACA TCCAGCCCCA CCAGCCTACA CGTTAGCTTA AATAGGGAGC TTTTACATTC CCCATGAAAG 002880 002881 GGAATCCAGG GACAGGCTGA GGCAAGAGAC CCCCAGTGTT CATGAGATGC CATCTAGAGA AAACACCGTG GTGCTGAAGG 002960 002961 CCTAAGTCAG ACCCCGGGGA GAGAGGCACC AGGGTGACTT TGGGTGGAGA GTCCTGTGCC TGTTCTACTT CTATAAATAT 003040 003041 ACTCAggtca ggcacggtgg ctcacgcctg taatcccagc acgttgggag gccgaggcag gcggatcatt tgaggtcagg 003120 003121 agttcaagac tagcctggcc aacatggtga aaccccatct ctactaaaaa tacaaaaaaa tggctgggca cagtggctca 003200 003201 cacctgtaat cccagcatgt tgggaggcca aggcaggcag atcatttgcg gtcgggagtt caagaccagc ctgaccaaca 003280 003281 tggagaaacc ccgtctctac taataataca aaaattagcc aggcatggtg gcacatgcct gtaatcccag ctactcggga 003360 003361 gactgaggca taagaatcgc ttgaacccag gaggcagagg ttctggtgag ccgagatcac gccattgcac tccagcctgg 003440 003441 gcaacaaaaa gcaaaactcc atctcaaaaa aaaaatacaa aaaaatgagc tgggcgtggt ggcctgcacc tgtaatccca 003520 003521 gctacttggg aggctgaggc aggagaatca cttgaaccca gaaggtggag gttgcggtga gcagagacca caccactgca 003600 003601 ctccagcctg ggtgacagag tgaaccatgt ctctaaataa ataaataaTA TGTTTGTCTG AAAGTGCCTT TTTAACAAAG 003680 003681 TATGAGATGT GTACATAAAG TGCACATAGC GCAAGTGTCG CACGCAGTGG ATTTTCACAC GCAGCACGTG AAATGGGAAA 003760 003761 ACACTggccc ggcacggtgg ctcacacctg tcatcccagc actttgggag gccgaggcgg gcggatcaca aggtcaggag 003840 003841 atcgagacca tcctggctaa cacggtaaaa ccgcgtctct actaaaaata caaaaaatta gccgggcgtg gtggcgggcg 003920 003921 cctgtagtcc cagctacttg ggaggctgag gcaggagaat ggcgtgaacc cgggaggcgg agcttgcagt gagccaagat 004000 004001 cgcgccactg cactccagcc tgggcgacag agctagactc cgtctcaaaa aaaaaaaaaa aaagaaaTGG GAAAACATTG 004080 004081 AGGATGAAGT AGCAAATATT TGAGAATTCA ACTTGATTGG TGGCTGTTGC AGGTTCATAC GTGAGTGGTT ACGTAGTGGG 004160 004161 TAGTTAAACT GACAATGACC AGCTGAATTT TGGTGACAGG ACTGCTCCTA AGGTTTGAAA TGTAGCGTAT CCTCTGATTC 004240 004241 ACGGGCTAAG CTCTGCCACT TAGCAGGAGG AGCTCATGAT AGAGCAGGTT GAGGGGAAAA CTTTGCCCCA TAAGGGTTCT 004320 004321 TCACTGCAAG TGAGAAGGTC TTGGCTTTGA GCCTCCAATT TCAATCAGAC AGAAAGCAGA CCAGTCGGCA GGACAGTATA 004400 004401 TGCCTCTGGA GATCCGTGCT GATGTGGGGG CCTCAGATAC AAGATGCCTC AGGGCCCAGG CGTGACCCTC TCCTTCCCTC 004480 004481 CTGCACGGAG ATGCTGTGAG AATTAGACAC TCCCACAGGG CCCTGTCAGA CACTGAGCTA GCCTCTGGGA ACCGGAAGAT 004560 004561 ATTCAAAACA CCAGCCACCC CCCACACACA CAGACAAGGC GCTGGAGGGA CAGCTGTGCA GCGGCAGAGC ATGAGAGGTC 004640 004641 TTGATCAGTT AACTCAGTGA GGTTAGGAGG CGAAtttttt tttttttgag atggagtctt actttgtcac ccagtcagga 004720 004721 gtgcagtggc gtgatctcgg ctcactgcaa cctccgcctc ctggcctcaa gtgattcttc cgcctcagcc tcccgagtag 004800 004801 ctgggactac aggtgcgtgc caccacaccc agctaatttt tgtatttttg gtagagacag tgtttcacca cgttggacag 004880 004881 gctggtctca atctcttgac ctcgttatct gcctgccctg gcctcccaaa gtgctgggat tataggtgtg agccacAAAG 004960 004961 CCtttttgtt ttcatttttg agatggagtc tcgctctgtc gcccaggctg gagtgcagtg gcatgatctc agctcactgc 005040 005041 aacctctgca tcccagttca agcagttctc cgcctcggcc tcctgagtag ctgggatcac aggtgcccgc caccacactt 005120 005121 ggctaatttt ttgtattttt agtagagatg aggtttcacc gtggtggcca ggctggtctc aaactcctga cctcaaatga 005200 005201 tctgcctgcc tcggcttccc aaagtgctgg gatgacactg agccaccgcg cctggcAAGG AGGTAACTTG ATCCATACGT 005280 005281 TTGCGTTTAC ATGGTGCgag gaaagggcac ccttggtaga tggaacagcg tgtacaaagg cccggaggtt taaaatcacc 005360 005361 actcttctag ccctcatact aactttgcct attttgaact ttatataaat ggaattatat tgcatgttct cttttgtatc 005440 005441 tgacttcctt ttctcaatac tatatgagtg gtatccatgc cattTAAAGT AATGGTGGAT TAACTCAATG CTACGTCGCC 005520 005521 TTCTAGTtga tggagggcag gcaagaccca cagtggggct gagcccctcg agggttcctg gctttgccca ggaaacaatt 005600 005601 caagggcaag ctggaagtga aagtaaacag GCCAGGCATG GTGggagtta ctaccccttt ccatggcaat gaccccacga 005680 005681 cccaaaagtt actacccctt ccctagaaac ttttgcctgg gctgcccctt aatctacatg aaattaaaag tgggtgtaaa 005760 005761 tgtggctgca gaactgtcct gagctgctgc tctcagcaca ctCTGCCCAG CACACCCCGC CTGCAGGGGC CGTCGCAGAG 005840 005841 CTGTAACCCT GCCGCTTCAA GCTGttttgt tttgtttttc tttcgagaca gtctcgctct gctcttccag tttgaatatc 005920 005921 acgcaggctg gagcgcagtg gcgcaatctc ggctcactgc aacctctgcc tcctgggttc aagcaattct gcctcagcca 006000 006001 cccgagtagc tgggattaca ggcacacgcc accatgcccg gctaattttt gtattgtatt agagacaggg tttcaccatg 006080 006081 ttggcgaggc tggtcccgaa ctcctggcct caagtgatct gcccgccgtc cgcctcagtg tcccgaggtg ctgggattac 006160 006161 aggtgtgagc caccgcaccc agcAaaagtg ctttctcgag atggaatctg cgcctggtga agatgctcta aacattgctg 006240 006241 agataacaaa ggatttagaa tattccataa acttcgttgg tacagcagcg atagggttcg agaggatttt ccagttgtga 006320 006321 gagaaggtct gctgtggaca aaatgctacc aaacagcatc gcgtgctacg gagaaatctt ttgtgaaagg aagaagctca 006400 006401 atgtggccag ctttattgtt gtcttatttt aagaaattgc TGGCCGGGTG TGGTggagaa tcacttgaac ccaggaggca 006480 006481 gaggttgcag tgagccgaga tcacgccatt gaactccagc tgggcataag agcaaaactc catctcaaaa aaaaaaaaaa 006560 006561 aaaggaagaa attgccacag ccacctcagc cttcagccac caccaccctg atcagtcagc agccacaaac aagaccttcc 006640 006641 accagcaaag agatcccaac ttcctcaagc ctcaggtgat tgctggcact ttctatcagt atcttagttt tttgtttgtt 006720 006721 tgttttttaa tttttgagac agagtctcac tctcttgccc aggctggaat gtagtggcac catctcggct cactgcaacc 006800 006801 tccgcctccc aggttcaagc gattctctta ccttagcctc cggaggagct gggactacaa gcacgcacca ccacacccgg 006880 006881 ctgatttttt tccattttta gtagagacgg ggtttcacca tgttggccag gctggtctcg aactcctggc ctcaggtgat 006960 006961 ccgcccacct tggcctccca cagtgctagg attacaggtg tgagccacca cccccagccA tttttttttt gagacgaggt 007040 007041 cttgctttgt tgcccagact agagtgcagt gacattatct cggctcacgg caacctctgc ctcccaggct gaagcaatcc 007120 007121 tcccacctct gtctccctag tagctgggac cacaggtgca cacccccaca cccggctaat tttttgtatt tttggtagag 007200 007201 acagggtttc accatgttgc ccaggctggt ctcctgagct catgcaatct gcccacttga cctcccaaag tgctgggatt 007280 007281 acaggtgtga gccactgtgc ccagcctatt attattatta tttattgttt ttttggtctt gagggagggt agggtggtgg 007360 007361 gagcccagtt ggggagggag tgaggagtgg tcaataaagt attttaaatt gaggcatatg cattgttttg taaacataat 007440 007441 gttattgcac acctgactgc actgtggtat aaacataact tttatatgca gtggaaaacc gaaaaatccc tccgactggc 007520 007521 tttattgcga catttgtgtt attgcggtgt ctagaactga accGTGGTAA CCCAGGCCCG CCTGTGCTAA CTTCCAGCAC 007600 007601 TACCGAGGTT GACGCAGCTA GATGGTTTTC TCCCCGGCTG GTTGCTGCTT CTCACCCACA GAGGCGGTGG AGCCCTTGGA 007680 007681 ACTGGGCAGA ACACAGGGCT GCCTTGTCAC CACTGCCTGG CTGAACCTGA AATTGGGCCG TTTGACAGAA AGACTTGAAA 007760 007761 GGGCCACCAG TAAATTCTTT TTTCTTTTCA TTGATTTTCC TCTTCTTACT TTCCTCCTCC TGAAGTTGGG GTCATGTCCC 007840 007841 AAGAAGACCC ACAAGGCCTG GCCTGTGGGT GCACATGTGG GGAGGGTCAG GTCTGTCGGC TGAGGAGGGC ATTGGTAGGG 007920 007921 GACTTTGAGC AGTGCTGCTC CGGAGACACG AATGATGGGA TGGGAGGCTC TCCCATATCT GCCGAGAGCA CAGCACCCCA 008000 008001 tgactcctgg gagcttgtca tagatgctgc agatgagtcc ttcctcagac gggatatttg ctaatgcctc tgccagcctg 008080 008081 ggcttgtctt ctcagggcct ttcaaaatgc acacaccctt cattctcatg atgtccagtg gatcaggttt tcctttatgt 008160 008161 gtcatgcttt tagtgtttaa gaatcatttc tctaacccaa gtcacactga catcctcctt ttcattctta acgcacattt 008240 008241 tacagttgta ggccttacat tttggcttat aataagttct gaggccaggc acagtgctca cacctgtaat cctggcactt 008320 008321 tgagaggcca a |
Predicted Small Protein
Name | NONHSAT017262_smProtein_5147:5407 |
Length | 87 |
Molecular weight | 9425.9022 |
Aromaticity | 0.0813953488372 |
Instability index | 40.7581395349 |
Isoelectric point | 10.290222168 |
Runs | 15 |
Runs residual | 0.034796945505 |
Runs probability | 0.0398633928046 |
Amino acid sequence | MRFHRGGQAGLKLLTSNDLPASASQSAGMTLSHRAWQGGNLIHTFAFTWCEERAPLVDGT ACTKARRFKITTLLALILTLPILNFI |
Secondary structure | LLLLLLLLLLLEEELLLLLLLLHHHHLLLLHHHHHHHLLLLLHHHHLLLHHHLLLLLLLL HHHHHHHHHHHHHHHHHHHLLHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i??????????????????????????????????????????????????????????? ?????????????????????????? |