NONHSAT017585
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT017585 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1477 nt |
Genomic location |
chr11+:3402191..3430378 |
Exon number |
11 |
Exons |
3402191..3402274,3404692..3404776,3405397..3405514,3422989..3423097,3423843..3423959,3424145..3424182,3424823..3424882,3426084..3426193,3427729..3427945,3428852..3428927,3429916..3430378 |
Genome context |
|
Sequence |
000001 ctcatttttc tcttgccgcc accacgaaag aagtgccttt tgcctcccgt catgattctg aggcctcccc agccatgtgg 000080
000081 aactGTTTGA GGCACAGAGC TGTATATACA ATAACAGTGA AATTGATCCC ACTACTAATT ATGACAAAAA TGATCTTCCA 000160 000161 CGTAAACAGG TGGTGAAGCT CCTTATGGTC CTGACCCTAC AGTTCCTGTC CCATGACCAG GGCCAGATCA CCAAGGAGCT 000240 000241 GCAGCAGTTC GTCGTCAGTG GCAGCCCCAT GCGAGCACCC GAGGAAGGGC TGTGACCGTC TATGACAAGC CAGCATCTTT 000320 000321 CTTTCAAGAG ACCTCTGGAC CTGCAGCACC AACTCTTCAT GAAGCTGGGC GGCACGCACT CTCCGTTCAG GGCCTGAACC 000400 000401 TGAGGACCCA GACACGGAGC GGTCGGCCTT CATGGAGCGG GATGCTGGGA GCGGGCTGGT GATGCGCCTC CGCGAGCGGC 000480 000481 CAGCCCTGCT GGTCAGCAGC ACAGGCTGGA CAGAGGACGA AGACTTCTCC ATCTGCTGGC AGCTTTAGAA AAGTTTGAAC 000560 000561 AACTGACTCT TGATGGACAC AACCTTCCTT CTCTCGTCTG TGTGATAACA GGCAAAGGGC CTCCGAGGGA GTATTACAGC 000640 000641 CGCCTCATCC ACCAGAAGCA TTTCCAGCAC ATCCAGGTCT GCACCCCTTG GCTGGAGGCC GAGGACTACC CCCGCTTCTA 000720 000721 GGGTCGGTGG ATCTGGGTGT CTGTCTGCAC ACGTCCTGCA GTGGCCTGGA CCTGCCCATG AAGGTGGTGG ACATGTTCGG 000800 000801 GTGCTGTTTG CCTGTGTGTG CCGTGAACTT CAAGTGGCAG GAGCAGAACC CGAATCTTTC TGGGGATAGC TTCACAGATC 000880 000881 CACCGCTGAG GAGGAAACAG TGCAGAGCGA GCTGCCCACA GTGAGGCCCT GCTCCTGGTT TACATGAGCT GGTGAAACAT 000960 000961 GAAGAAAATG GCCTGGTCTT TGAGGACTCA GAGGAACTGG CAGCTCAGCT GCAGGTGCTT TTCTCAAACT TTCCTGATCC 001040 001041 TGCGGGCAAG CTAAACCAGT TCCGGAAGAA CCTGCGGGAG TCGCAGCAGC TCCGATGGGA TTAGAGCTGG GTGCAGACTG 001120 001121 TGCTCCCTTT GGTTATGGAC ACATAACTCC TGGGCCAGAG GCTAAAACCC CGGGACCCCT GCTGTCCTTC CCACAGCTTC 001200 001201 TTCTCAGAGT CTCAGGGCAA ATCCTTTCGA GCAGCGCCTC CCAGTGGCCA GAAGCTGAAA TGATGGCAGT AGTGCCACCT 001280 001281 GGTGAATGAA TTGGTTCTGT GACCCGGGAA GCTGTGCTTG GCTCTGATTT CTTTTCTGGA GGCTCGGAAA CACTTCCTCT 001360 001361 CTTCTTCTGT TCTTCACGCC CCATGCCCCT GCTAGCGTAT TACTGTTCTG TGACTTCCCT GTGACCTCTG CAGTACTCCT 001440 001441 CATCCTGCGT TTGGTCTCCA GGTGTCACCT TTCTGCC |
Predicted Small Protein
Name | NONHSAT017585_smProtein_1094:1288 |
Length | 65 |
Molecular weight | 6635.5744 |
Aromaticity | 0.0625 |
Instability index | 50.2375 |
Isoelectric point | 4.55706787109 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0371842430666 |
Amino acid sequence | MGLELGADCAPFGYGHITPGPEAKTPGPLLSFPQLLLRVSGQILSSSASQWPEAEMMAVV PPGE |
Secondary structure | LLLEELLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHLLEEELLLLLLLLHHHEEEEL LLLL |
PRMN | - |
PiMo | - |