NONHSAT018224
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT018224 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3256 nt |
Genomic location |
chr11+:17353589..17371521 |
Exon number |
3 |
Exons |
17353589..17356027,17358895..17359081,17370892..17371521 |
Genome context |
|
Sequence |
000001 AACAGAAAAA ACAAAGATAA CAGTGGTTTA AACTAAATAG GAGTTTTTCT TCTTACATAA GTCTAGAAGT AGGTGGTGTC 000080
000081 CAGGTTCCTA TCTTTCTGCT CTGCTATCCT CAGTGCATGA TTTTTATCCT CAGATTACCT CACTCTCACT GTTCAAGTTT 000160 000161 GCTCCTGGAG GCAGTGGGGA AGGCAAGAAA ACTGGACTTT CTCTGCTTGA GTTAGCTTCC CTGAGGCCAT TTTCCAGAAC 000240 000241 CAGCAGCACC TGAACTTATG TTTCGACCAG AACTGGGTCA CACTGATGGC CACACCTAGC TGCTAGGGAG GCTGAGAAGT 000320 000321 CAATGTGGCA ATGTGACCAG CTAAAAGTTG GATTCTTTTA CTAAGGAAGA AGGGAAGAGG GAATGTTTGG TAGGCAACTT 000400 000401 TGGATTTTAA ACTCAGCCAG CCTTGTTGGC TACCTAAATT CTGTGTACCT TCTTCTTCCG AGAGAGAAAA CACTCACCCC 000480 000481 TCTCTCCCTG AAGAGAAACC ACCAGAAATC CAGCCCATTA TTGCATACTA GATGAAAGAC CATGCTATCT GGAGACAGTC 000560 000561 CCCTCCATCA TGTTAGGGTG TGGCTCCTTG TGTTCTGGCC ACCTACAAAC TGAAAGACAA GTTTTCTGCC CTGAGAGCAC 000640 000641 CAGATGCATA ATGCAAAGGT GCAGGAAAAC TGACCTTTTA AATTTTTTAG AGACAGGGTC TTACTCTGTT GTCCAGTCTA 000720 000721 GAGTACAGTG GTGTGATCAT AGCTTACTGC AGCCTTGAAC TTCTGGGCTC AAGTGATCCT TCCACCTCAG TCCCCCTAGT 000800 000801 AGCTAGGACT ACAGGCACAT GCCACGAACG CCTGGCTAAA CATTTTTTTT TGTAGAGATG GAGTATTGCT ATGTTGCTCA 000880 000881 GGCTGGTCTT AAACTCCTGG TCTCAAGCAA TCTTCTCACC TCAGCCTCCC AAAGCACTGG GATCACTGGT GTGAGCCACC 000960 000961 ATGCCCAAGA TCCCTAAAAT TGACCTTTTA GAAAAAGGGA GAAATAGAAA TATAGTGGCC ACTGATCCAT AGCAATTTGA 001040 001041 AAGTACCACT TGGCAAAAAT AATTAAATCT CTCTGCTATA GTTCATGAAT ATATTCCTTG GTTTGCCTAT CAGGCAACCC 001120 001121 CTGATTCACC TTTCTGAGAG GAATTCCTTT ACCTAATGTC CTCAGGGGGC CTTGGTTTTA CTTTCTTGGA GGTTTTTATT 001200 001201 GTACATTAAT TTTCAGACAC AATCTGAATG GGCATTGGAA AGTATACCCT TCTTGGAGGC TGGGCAGCCT TAGCAGTTTA 001280 001281 CTTCCTATAA TTGTGAGTCT GGGGGCAGGC TTGGGAATTA GAGTATAGAT CCGTAACAGC TACAGTCTAT TGCAGGCCAG 001360 001361 GTTTGGGTTT TTGTTGTTGT TTTGTTCTGT TTCTTGGCCA AGTGGATTCC TAAAACTTTA GTAAGTTTCT GGTCTGTTGT 001440 001441 CTTCAGTCAT TTACATGGAC AGTATTAACC AAGGTAAAAT ACATTGTTTT TAACAAAGAA CCTCATCATT TACTTGCTGG 001520 001521 CCTCTGTGTG CTCTCCATCC CCTTTGTTCT TACAGGAATG GTACCTCCTT GAGATCCTTT GAGACTGTAG GCTTGCATGG 001600 001601 AATGGCAACA GTCTTAATCT GATCTCTTCC CCTAGGATGG CTCCTATTAT TTGGCAGAAA ATTCTTAAGG GAAGGTTCTT 001680 001681 AAAAAAGGTT GAGAAAGTTT TAGTAGCTCC CTCAGAGCCT TTACTTATAA ATGTTTCAGT TTGGAGTACA GTTTTCAATT 001760 001761 CTTCAGGGCT CCAGATTTGG GACTTGGTCA ATTTATATGG TAGACAAAGA GCAATTCTCT CAGCAAAGCT ATTTTTCCCT 001840 001841 TGCGTCACTG CAGACTTGTT AATCTTAGTC CAAGTCACAT ATCTCTTGTA GGGCTTTGCT GAAAAGAGGC AAGAAGCAGC 001920 001921 CAACACATGC TAGCACTCTG AAGTTCTACC ACCTTCGTCT CTGTGGCAGG AAGTCTCAAC CTCACCTTGA CTTCTGTTGG 002000 002001 CAAGAAGTCT CACTGCCCAA AGCCCTACCT CCTCAACTAA GCCAACCCCA GATTTAGGGC CTTCGACTTG CTGTGCTTTA 002080 002081 CTTCTAGCTG CCAAATTCTG TATAGGTCAA GATTCTTGGC TGTAAGCAAT GAAATCTTCT TTAGCTATTA AACAGAAGGG 002160 002161 AATTGATGAA TGAGTATATA TAGGTCACAG AATCAATGGG AGGGTTGAAG AAACAGATCT AGGCTGAGCT TCTAGGAATT 002240 002241 ATGTCACAAG AGTAGGCTGC TGAAAGAGCT GCTGCTTTTA GAACAATCAA GAAGCTGCCT GCTGGATTAG GAAGCTGCCT 002320 002321 GCTGAACAGT TGCCAGTTCC AGAGCCACAC CACCTCTGCC ATGCTTTATG CCAGCAAAAA TAGATACATC TCTTCCTGCC 002400 002401 TCTGTCCCCA CGTTACTTGG CTCTGAGTAA AAGTCTCAAC CATGAAGTAC AATCAAGAAG AAATTGAAAA ACAGTCAGAG 002480 002481 TTAGATGATG AGCTTCATCG TTTGTCATGC AGGATTTTTA TCCCCTGAAG AACCTGCTAG AGAAGTCCAC CTTCACCCTT 002560 002561 AACCACTGGT GCCTCAACTT AATACTTTTA AAATTCATTT GTTTCTGTTG GAATTGGGAT ACTAAGGTCC AGAGGTGTCC 002640 002641 TTCTAAAGCT GGTAGAGGTT TCACGAGTCA TCAGGGACCC AGAACCCTTC TCTTTTGCTG TCCCTTTGTC CTAGTGCATG 002720 002721 GTTTCCACAC TGTGGTGCAA GATGTCTCCT CAAGCTCTAG GCATTACATC TGCTATCCTG CTGTCAGAAA GAAGGAAGGG 002800 002801 GAAAAGAAGA TCATTTCCTT CTCTTTAAGG ACATTTCCCA GAAGTCACAC AGAACATTTC CATTTATATT ACTTTGGCCA 002880 002881 GAACTTGGTC ATATGGCCAC ATTTAGTTCC AGAATGATTA GGAAATGCAG TCTTTTATTG ATCCCTGTGC CCAGGAAAAT 002960 002961 ATTGGAGGCC TTTTTCAAGG AAAAAGGGGA AAACAGATAT TGGTTGACAA ATAGCAGTCT CTGCCATACT GTCCCTGGAT 003040 003041 ACATGTCTTT GAGTGAATGT CCCTTATTTA CCATTCTGAT TACTTGTTGG ATATTTTCAA TATGTGTTAC AATATGGTTC 003120 003121 CAAAATTGTA TGTGATATTC CAACAGCAAG TTGGATGCAA TGTGTCATAA AAATGACCTC AGTGTCAACC AGCATTTGAA 003200 003201 TACCGTGTCT CAATGCTGTG CACCAATAAA GAACACAGAA AGTCAGAGTT TTCCAT |
Predicted Small Protein
Name | NONHSAT018224_smProtein_569:757 |
Length | 63 |
Molecular weight | 7078.1041 |
Aromaticity | 0.0645161290323 |
Instability index | 45.764516129 |
Isoelectric point | 7.61236572266 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0446917505741 |
Amino acid sequence | MLGCGSLCSGHLQTERQVFCPESTRCIMQRCRKTDLLNFLETGSYSVVQSRVQWCDHSLL QP |
Secondary structure | LLLLLLLLLLLLLLEEEEELLLLHHHHHHHHLLLLHHHHHHLLLEEEEEEEEEEEELLLL LL |
PRMN | - |
PiMo | - |