NONHSAT022614
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT022614 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3776 nt |
Genomic location |
chr11-:69480334..69488152 |
Exon number |
3 |
Exons |
69480334..69482355,69482663..69482780,69486517..69488152 |
Genome context |
|
Sequence |
000001 AGTTTTTCTG GAGAAAGTAT TCTTTCTCCT GTTGATTTGA TGAAGCATGC TTCTTCTTCA CAGGTTTCAT GGGGAAGGGT 000080
000081 ATCGGGAAGG CTATGAAGAA GGCAGTAGTT TGGGTGTGAT GGAGGGAAGG CAGCATGGCA CGCTGCATGG AGCCAAAATC 000160 000161 GGGTCTGAGG TAAGTGGGAA CCCCCATCTG GAGATGAAGC CTCTTCATTT ACAATTTATA ATTTATTTCG ATATTCAGTG 000240 000241 TGATGGAGTA AGAATTGTCA GGCCTTTTAA AATCACAGTG CCGGATgggc gcggtgactc acacctgtaa tcccagcact 000320 000321 ttgggagtct gaggtgggtg gatcgccttg aggtcaggag ttggagacca gcctgaccaa catggtgaaa ccctgtctct 000400 000401 actaaaaata ctgaattagc tgggcatggt ggtgcatgcc tgtaatccca gccacttggg aggctgaggt atgagactcg 000480 000481 cttgaacctg ggaggcagag gttgtggtaa gccgggaccg tgccattgca ctgcagcctg ggcgacagga tgaaactcca 000560 000561 tctccaaaaa ataaacaaaa aaaaTCACAG TGCCTTTGCA TGGGAGTTAA TGGACTAGAT GGACTGTTGC TGGAGAAATA 000640 000641 TTCTTAGTAC AGAACCAAGA GTGCATTTTG CTGTAGGTAG ATACAATTAA ATTATGCATG CTGGATAAAA GAAAACAAGT 000720 000721 CCCTGGTCTC CTTAGTTTAC TTGGGAGTGT CATGGTGCTG GCTCATGTAC TAAGCCAAAG AATGGGTGCC CTCTGTCATG 000800 000801 TGAACATATT CCATTTATGT TTACGTTGAA ATTTCATTAA CTTTATGATT TTTTTTTTTC TCTTCTTGCC CTTTGTCCTA 000880 000881 GATTGGCCCT TACAGATAAG TGGCCCTTAG TGGCAAAGTC TGAGTTGAGG CAGTTATGAC tatattggat gttcgatgct 000960 000961 gtgaaacaga tcaccacaaa attcatgggc ttaacacagc aaatatggat gatctcacat gtttctgagg gttgggaact 001040 001041 caggagcagc tttgctgggt ggtcctggct cagggtgtca gccagagccg tgtcacctga aggcttgact gggcttggag 001120 001121 gatctgcctc caaggtggtg ctgtcacctg actgtgggca tggacgtctc catggggctg cttgtgtgtc ctcgtgacat 001200 001201 tcaagagcga gtggtccaag agagctggtg aggcaagtga cactggcttt tatccctaga ctcaggagct ttgtgctgtt 001280 001281 cctccacatt ctgttggtta cgaaagccac cctggtggag tgtcgaggga cctgcacagg gcatgggtac caggagatga 001360 001361 ggactggggc atctgggagg ctggctgccc caCCGATGAC CTAATTTCCT AATTTCCATT GCCTAATGCT CAACAGGTGC 001440 001441 TTCCAGAACA ATAGTGTGAG AAGCACCGCT GCCTTCTGCC CCCACCTTTT GTTTTGAGAT CTTGGTAATG AAAGTGTAGC 001520 001521 TAGTTGCTTA TTAATTTCAC TCTTAAATAT TTTTCACATT CACAGATCGG GTGCTACCAA GGTTTTGCTT TTGCATGGAA 001600 001601 ATGTCTACTG CACAGTTGCA CCACTGAGAA GGACAGCAGA AAGATGAAGG TCTTAGAATC ATTGATTGGA ATGATCCAGA 001680 001681 AATTCCCTTA TGATGACCCT ACTTACGATA AACTCCATGA AGACTTAGAC AAGATCAGAG GAAAATTTAA ACAGTTTTGT 001760 001761 TCGTTACTCA ATGTTCAGCC AGACTTTAAA ATTAGTGCAG AAGGTTCCGG ACTTTCATTT TGAGGAGGAT GGATGAACAG 001840 001841 AGACCGAACG TCGAGGAACA GATGTGTGTG TGACGTGTTT AGAAATGCGG TGAAGGGCCA GACGGTGCTG GGAAGGCAGT 001920 001921 TGTTCATTGG GAGGGTGAGG GTTCCGGTTC GGCCGTGGGA GGGCTTCCTT CCCTGGGGTT TTCTGCCTGT GTCACCTTGG 002000 002001 TGCCCGTCTT GGGGCCTCGC CACACATGCC CTTTGTTGGG CTGAAGCCGT CCCTGGCAGA GCCCTCGTGC ATTGACTTGA 002080 002081 CAGCCTCTCC GGCAGCACAG GCCTAGCTGG TTCTGGGTTG GAGTTGGCTC TGGATAGGGT CAGTCACCAG GCCTGGACTG 002160 002161 AAGGCAGtta tttttattat tattattatt tGCAATGAGA GAGATGGTTG GCCCCGAATG AGGCTCATGG GAGGTTTGGA 002240 002241 CGGGTGCTGt gccgcatgtc gaggccgatt gtgtgccagg cggtgcggga cgtgcctccc gtgtgttatt taatcccttc 002320 002321 aggagcccac aagatgggtg ttattctcat tttacagagg agggagggga gacgcgaagg gattgcctgg tctaagggca 002400 002401 cccagcagca gagctaggac ttccgcccta aggctgtgcc tcactGCCAC CAGGCACAGC CGCCTCCGGA ATGCACAGGC 002480 002481 GAGTCCCTGC CCTCCCTCCC AGGCCGCACA GGTCCTGCCA AGCCTCACGG AGCACGGGGG AGTCTGTGGT GGCCAGTTTA 002560 002561 CCTGGGCATC TGGCTGAGAG GAAGAAAGGC CAACCTGATC CTGAGGGGAC CCAGACATAT CCTTTGCACT GTCCCTAGAG 002640 002641 GGGCGATGAG CTTTGCAGCA TTAAAAAATG GTGAAGGGGG GAAATATTTT GAACCAAAGA CCAAATGTTA GGCCGCCGTT 002720 002721 ATATTTGCAG AAGCTTTGAG AACCATGCGT ATAGCCTCCT GCATTCTCCC CTCTCCTAGG AGCTCTTTTG TCTCTGTCCT 002800 002801 TACGAGGCGT CATACAGAGG CAGTGGGGTG GGCACAGATG AGCAGAGTGG ATGGTTCGGT GGGTCCCCAC GAGGCGAGTG 002880 002881 GTGGTCATAT GTGATGGCAC GTGTTCACAC ACCCTCCTGT GTACCCCCCC AGGGTCACCG AAGTCCCCAC ACGCTGGCTC 002960 002961 TCCACACCCC TCCTGTTCCA GAAAGCATGT CCGAAAGCAG TCCAGGAGAT TATTAAGGGG TCGCCATGAA TCCACTTTGG 003040 003041 TTTTAAAACC ATTCCCGAAT GTCCTAGTGG ATTGTGTTGT GCTGCCTAAG CTGCCGGCTG CAGGAGCCAG AGAAGTGACC 003120 003121 CCCGCGGGAG CAGCGGCAGG TGGATCTCCA CGGTGGCTCG Ctttgttttt gttttgtttt ttcttttaag acggagtctc 003200 003201 actctgtcgc cgagtttgga gtgtattggc gcgatctcgg ctcactgtaa cctccgcctc ctgaattcaa gtgattctcc 003280 003281 tgcctcagcc tccctagtag ctgggattat aggcgccccc caccacgccc aagtaacttt tgtattttta gtagagatgg 003360 003361 ggttttgcct tgttggccag gctggtcttg aactcccagc ctgaaatgat ccacccacgt ccacctacca aagtgctgga 003440 003441 attgcaggca tgagccacca ctcccggccT GCTTTTTGTT TTTGAAGACA GGACTTAGGT CTCCTCCTCC CGAACTCTAA 003520 003521 ACCTGCGTGT GTGGCTGTGC ACCGCTCGTT TGTAGCGTCA CCTCAGGTCT GGGGAAGTCT GTGCTGGCAT CTCCTCATTG 003600 003601 TGCCTTCATC AGAGCTGGTG CCTTCGGGCC AGAAAGACTC TCgttctttc tagatggtgg gatcaggggc ctttgctgtg 003680 003681 tttcccttgg tggatttttg tgttttgtaa gttgtctatt ttgataatgt attattttta taactgtaaa aaaaGTAAAT 003760 003761 AGCATATTTT AAAGTG |
Predicted Small Protein
Name | NONHSAT022614_smProtein_1832:2074 |
Length | 81 |
Molecular weight | 9099.5518 |
Aromaticity | 0.1125 |
Instability index | 41.445 |
Isoelectric point | 11.0947875977 |
Runs | 12 |
Runs residual | 0.0111842105263 |
Runs probability | 0.0396499440618 |
Amino acid sequence | MNRDRTSRNRCVCDVFRNAVKGQTVLGRQLFIGRVRVPVRPWEGFLPWGFLPVSPWCPSW GLATHALCWAEAVPGRALVH |
Secondary structure | LLLLLLLLLLEEHHHHHHLLLLLEEEELEEEEEEEEEELLLLLLLLLLLLLLLLLLLLLH HHHHHHHHHHHLLLLLEEEL |
PRMN | - |
PiMo | - |