NONHSAT023785

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT023785

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2001 nt

Genomic location

chr11-:95512000..95522946

Exon number

8

Exons

95512000..95512118,95512242..95512299,95512771..95512851,95513043..95513090,95516229..95516428,95519283..95519438,95520788..95520842,95521663..95522946

Genome context

Sequence
000001 GGATCCACGG CCGCACAGCT AAACAGCAAC CCCCTACCCG CTTCGTCTCC CTCCGCCGCT ATCGGGGCCT AAGCGGGAGC 000080
000081 GGCTGGCACG GCGTCACTGG GTgggctggg gcggaagtgg aggcggaggg agacggtggc gtcgtccgcg gggccctggg 000160
000161 ctctcgcggc gaggccctgg tgggcgcgag gcagggggag ggggaggagg aggagcccgc ggcccgggcg gcggcggCTC 000240
000241 TCGGGTTCTC CGTAGGGCCC CGCCTCGGAG CGGGCGGCGG CGGAGGAGGA GACTGAGGAG CAGGATGGCG GCCTCGGCCC 000320
000321 TGTACGCCTG CACCAAGTGT ACCCAGCGTT ATCCTTTCGA GGAGCTCTCC CAGGGCCAGC AGCTCTGCAA GGTCCGTGGG 000400
000401 CTCCGGGAGG CGGGCGGGAT GGGTGTCCTC GGCCGTAGCC GGAGGGGGCC GGGTAGCCGC TGCACTGCAG CCCCTCTTCG 000480
000481 CCGGCGCCTC AGGGGTTTGG GAGTCTGGAG CCCTCGCCTC CCCACTCGGG GACCCCTTTT TCTGGGGGCT TGAACATTAG 000560
000561 CTGGGAACGG ACCCTGAAAG GGAGGCAGAA TCGTGCCCTT TTCCAGGCGG CCCAGGAGGG TGCCGGGCCC CGTCAGCGTC 000640
000641 TGGGGGTCTC AGGAGTGGGG TTGAGTGAGG CAGCCACCTG TCTATGCCGC AGAGACCCAG GGGTGGAGAT GTTTTCATCT 000720
000721 CGGTTTTCTG CCTGGTCTGT CCTCTTCTTC CACCAGGAGG CAGGGGACGG TTTTTGCACT TTCTTGCTAG GAACCCGAAG 000800
000801 CCGCAAAGCT GATGGCATCC TTCTTCCCTG TCCAGGAAAG CGAAGCGACT GGTTTGGGAA CAGAATGCTC TGATTTGGAG 000880
000881 CTCCTCCCAT CCCATTAAAG CCTGGATGCT GTCTGTGAGC AACGGTGCAA AATAATAAGT AGTTTCACAT TTAACCAATC 000960
000961 CTTGAAATAG GCCCTGACAG CTTTCTTAAT TTGTCTGTAA TATACCCCCA CGTCTACTAA AGACAAAGAC ACCTGTGCCT 001040
001041 TCCCTAAGGA ATTATATTGT GATTGGCCAC TTATATGATA AAGCATCCAG TTCTTTACGT TGGGGCCAGG TTTTATAAAT 001120
001121 GTTTTAGACT TTCACTAGGT TGGGTAAACA GTTTTCTACC AGAAAAGTGA GATTTGGGAC TTTCAGAAAG ATACTGACTA 001200
001201 ATGTATTGTC TTATTACAGG AATGTCGGAT TGCACATCCT ATTGTAAAAT GTACTTACTG CAGATCAGAA TTTCAACAAG 001280
001281 AGAGCAAAAC TAACACAATT TGTAAGAAGT GTGCTCAAAA TGTGAAGCAA TTTGGGACGC CCAAGCCTTG TCAGTACTGT 001360
001361 AACATAATTG CAGCATTTAT TGGTACCAAG TGTCAGCGTT GCACAAATTC AGAAAAAAAG TATGGACCAC CTCAGACCTG 001440
001441 TGAACAGTGC AAACAGCAAT GTGCTTTTGA TCGGAAGGAG GAAGGAAGAA GAAAGGTTGA TGGAAAGTTA TTATGCTGGC 001520
001521 TCTGTACTTT ATCGTACAAA AGAGTTTTAC AGAAGACGAA AGAACAAAGG AAGAGCCTGG GATCTTCACA TTCAAATTCA 001600
001601 TCTTCTTCAT CTCTTACTGA GAAAGACCAG CATCATCCAA AAcatcatca ccaccatcat caccatcacc atcGTCACAG 001680
001681 CAGTAGCCAT CACAAAATCA GCAATCTAAG TCCAGAAGAA GAGCAGGGAC TGTGGAAACA GAGCCATAAA TCCTCTGCAA 001760
001761 CAATTCAGAA TGAAACTCCA AAGAAAAAGC CCAAATTGGA ATCTAAGCCA TCTAATGGAG ATAGGTGTAT GTAATGTGTG 001840
001841 CCATTAGTAA GGTAATTTGC CAGTTGCATC CATTTCTGTC AGCTCTATAA ATCAGTCAGC AGATAGTGGG GGAACAGACA 001920
001921 ATTTTGTCCT TATAAGTCAA TTGAAAGAAG AAGTGATGTC ACTTAAGCGT CTCTTACAGC AGAGAGACCA GACCATTTTA 002000
002001 G
[back to top]

Predicted Small Protein

Name NONHSAT023785_smProtein_1421:1708
Length 96
Molecular weight 11085.9169
Aromaticity 0.0631578947368
Instability index 59.0074736842
Isoelectric point 10.5198364258
Runs 13
Runs residual 0.00779113137174
Runs probability 0.0571114100526
Amino acid sequence MDHLRPVNSANSNVLLIGRRKEEERLMESYYAGSVLYRTKEFYRRRKNKGRAWDLHIQIH
LLHLLLRKTSIIQNIITTIITITIVTAVAITKSAI
Secondary structure LLLLLLLLLLLLLEEEEELLHHHHHHHHHHHLLLEEELLHHHHHHHHLLLLHHHHHHHHH
HHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooo