NONHSAT024581
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT024581 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2125 nt |
Genomic location |
chr11-:118967221..118971119 |
Exon number |
2 |
Exons |
118967221..118969197,118970972..118971119 |
Genome context |
|
Sequence |
000001 GGAATCCTGT ACTATGTCTA CATGGGGCTG CTGGCAGTGT TCTGTACCAA TGCCATCAAT ATCCTAGCAG GAATTAACGG 000080
000081 CCTAGAGGCT GGCCAGTCAC TAGTCATTTC TGCTTCCATC ATTGTCTTCA ACCTGGTAGA GTTGGAAGGT GATTGTCGGG 000160 000161 ATGATCATGT CTTTTCCCTC TACTTCATGA TACCCTTTTT TTTCACCACT TTGGGATTGC TCTACCACAA CTGGTAAGTA 000240 000241 GGCCTGTGGA TAAGGGGACA ACTACCTGAA CACATGGCAA AGATGGCCCT TATCATAACC CACCTTGTGG TGGTGAAGCT 000320 000321 AAACCTGCGC ATACCTCTAT GGAGTTTTCT GCGTCTTCAG TTGGTCGTAT TCTGAAATTT CTCTCTACCC AGTAGTAGTT 000400 000401 AGGGATGAGT GCGTGGAGGC CCCAGGAATA GATGAATTCA GGGCCTTGGA TCCTGCAGAG TTGCTGCACA ACTGGAGTCT 000480 000481 CCTCTGAGTC AGAACTAGGG TCAGGGCTAG TCCAGTGCCC ATAGGGTGTG ATGTGAGAGA AGGGATTGGT AATGCCTCTT 000560 000561 GCCACTGGCT CGGATCCTCT TCCCCCACAC AGGTACCCAT CACGGGTGTT TGTGGGAGAT ACCTTCTGTT ACTTTGCTGG 000640 000641 CATGACCTTT GCCGTGGTGG GCATCTTGGG ACACTTCAGC AAGACCATGC TACTATTCTT CATGCCCCAG GTGTTCAACT 000720 000721 TCCTCTACTC ACTGCCTCAG CTCCTGCATA TCATCCCCTG CCCTCGCCAC CGCATACCCA GGTAGCCGCT TTTTGGCTTG 000800 000801 AAATGGACAT CATAGCCTTT TCACTTGGGA TATCTAATGC CAGCCTATAC ATTTGCTGTG CAAAGGGAGT GGGCCCAAAG 000880 000881 AAGGGCTATt tccatgtgag tagcccttta taacttacaa agcacattta tttgcataat ctGCTACAGT GGTTCTGATA 000960 000961 ACagtaagca gcagagccag aaatagatct caggttgact ccacattcaa tgctcttcct attagccaca GGGAGGAGGG 001040 001041 TTCAAATAGT GGCCCAGTCA CATGAAGCTA TCTTCCCCCC GCAGACTCAA TATCAAGACA GGCAAACTGG AGATGAGCTA 001120 001121 TTCCAAGTTC AAGACCAAGA GCCTCTCTTT CTTGGGCACC TTTATTTTAA AGGTAACAGG GTAACAAGGA GGTAAGGCCC 001200 001201 TAGGCTGCCA TCCTGACCTT GAGGAATGGG GAACCTAGTC CTACATCAGA TCCAAGGGGA ACTTGAAAGC ATTAAATAGA 001280 001281 TCCACATTCC TAAAGCATAG GTATTAGCTG AGGTTCTCTT CACCTCTGGT CCCTCCAGGT GGCAGAGAGC CTCCAGCTGG 001360 001361 TGACAGTACA CCAGAGTGAG ACTGAAGATG GTGAATTCAC TGAATGTAAC AACATGACCC TCATCAACTT GCTACTTAAA 001440 001441 GTCCTTGGGC CCATACATGA GAGAAACCTC ACATTGCTCC TGCTGCTGCT GCAGGTGAGG ATGGGAATCG AGTTTATACC 001520 001521 TCCGTGTCTC CCTTTCTGCG TGATTCTTAC TCCAGTCCAT TTCTCCTTGC AGATCCTGGG CAGTGCCATC ACCTTCTCCA 001600 001601 TTCGATATCA GCTCGTTCGA CTCTTCTATG ATGTCTGAGT CCCTTGATCA TTGTCCTTTA CCTCACAGTC TCTAGGATTC 001680 001681 CTGACTCAGG CTGACCTCTC TCTCTGGTCC CAGACTGCCT CCTTGCCCAG GCCTCTCTCA CTCTTCATAC TCCTCCAGAT 001760 001761 TTTGTTCTCA GCATTTTCCT TTCTCTGTGA TCATTGGCAT CCTGGGCGTT TCTTGCCCTC TGCTGACTAC TGATTGGATT 001840 001841 TTACCTATGG CTTTCTGCAA CTTGCTACTC TCTCCCTCTC CATCCCATCT TTGCAGCCTC ATAGGGTGGG ATACAGCAGC 001920 001921 TTTTTTTGCA GTTATCCACA CTCACATTTC AGAGTCCTGA CTCTCAAGGA ACCACTGGTT TTTGGGATAG AACTTGGGCC 002000 002001 AGGGCTAGGA ACACAGGCTC CACGGTGACA TGTCATTTGA TTGTAAATTA AGTGTTCTGA TTAGTAAGAA CTAAGCAGGG 002080 002081 GGCCACATGC TCTCAATGGA GACAATAAAG TGTTGTCTTT TTCTT |
Predicted Small Protein
Name | NONHSAT024581_smProtein_551:784 |
Length | 78 |
Molecular weight | 8810.4335 |
Aromaticity | 0.155844155844 |
Instability index | 41.1311688312 |
Isoelectric point | 9.69097900391 |
Runs | 10 |
Runs residual | 0.00621118012422 |
Runs probability | 0.0440116587176 |
Amino acid sequence | MPLATGSDPLPPHRYPSRVFVGDTFCYFAGMTFAVVGILGHFSKTMLLFFMPQVFNFLYS LPQLLHIIPCPRHRIPR |
Secondary structure | LLLLLLLLLLLLLLLLLLEEELLLEEELLLLEEEEEHHHHHHHHHHHHHHHHHHHHHHHL LLLLEEEELLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHH HHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooTTTTT TTTTTTTTTTTTTiiii |