NONHSAT025386
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT025386 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2027 nt |
Genomic location |
chr12+:1420758..1422780 |
Exon number |
1 |
Exons |
1420758..1422780 |
Genome context |
|
Sequence |
000001 TTTTTTTTCT ATGTATGTGA AGTGGTAATA GTTTTTCTCG TGTATCAGGC AACTACCAAC TTATTTTAGA CCAGAAATTC 000080
000081 TTGGAAATGG TACCAATCCA GTTGGCATAA AATGTGCAAG CACTATTCTA TTGATTCCTC AAAAAGATGC AATTGCTTTA 000160 000161 CTCATAGAGT TATCAGTTAT TTTTCTGGCT ATTTCACTTG AAGTAGCCAT GCTTTGTCTT TTTTTCTATG GAGATACGTG 000240 000241 GCCAAAACTA AGTCCTTTCA CCAGCTGGAT GATAGGAAAT TTGATAAAAT TTGAGCAGTA TAAAAACTTT CCCATTGACT 000320 000321 TTATATGATT GAATTTCCAC TATGTAAAAT TAAACTAATT ATTTCTTATG CTACCCAATA TATAGTTTAT TATTTGAAAA 000400 000401 CTATGTCCCC ATTTTTCCTC AAGAACATGA TTTTGTCTTT TGCATCTCAG TGCAGGGGTT GGACAGCATA ATTTCTTCTC 000480 000481 CTAGAAACAC ATTTTCTGCT GCTTGTAGCT ACTATTTCTA TTTTTTCATC AATAGCTACA GGAGTAAGTG GAGTTCCTGA 000560 000561 CATCTCTGTG TAATCAGTGG TATGATCACA TACCCCATAT TGACTTTTTC TTTTGAAGTT TATGCTGCTG TCTCTTCAGT 000640 000641 ACCTTGAGCT TGACCTCTAG CTTTAAGCAG TAAAGGTATC AAAGAAAATC AGTTGCCAGA GTCAGTCTGT TTGCTTGTGT 000720 000721 CCTCCTAACC CACTGATGGC ACCTCTGACT CCTTGACATT GTATTATTTG TTTCTCAGAG AAGTAAAGCA ATTTTTTTTT 000800 000801 TCCTCTGTCA CCCAGGCTGG AATGCAGTGG CGGGATCTCG GCTCACTGCA ACCACCTCCC GGGTTTGAGT GATTCTTATG 000880 000881 CCTCAGTTTC CCGAGTGGTT GGGATTGTAG GTGCCTGCCA CCATGCCTGA CTGATTTGTG TATTTTTAGT AGAGACGAGG 000960 000961 TTTCACCATG TGGGTCAGGC TGGTCTCGAA CTCCTGACCT CAGGTGATCT GCCCAGTTTG CCCTCCCAAA GTGCTGGTAT 001040 001041 CACAGGCGTG AACCACCACA CCCGGCCAAA GCAGTTTTTT TTACATATAG GCATTTAATA TATTGACTTT GGTTGATTCT 001120 001121 TACCTCACTT CCAAGATAAT TGTTTCTGTT AAATTACATG TATTTTTAGG CTTGAGTCAT CCACTATATT TATGAGTTGG 001200 001201 TCATTTCTTT CATGAGTTGA GCTTGTTTTT AAAAGTTCTA CTTTTAAAGC CCCCTTCTGT CTCTCCTGCA GCCACTTTCA 001280 001281 CTGTAACATT TATCATGTTA TTCCTGGCAG CCAGTCTTCT TAACTCTCCA TCATTACTTT TGGCAGGTTA CAGCAGTATC 001360 001361 ACTTAGGGTT CTCTTAGTTC ATTTTTAATG AACATCCAAA AGATGCTCCT ATTGCAATAA AACCATAAGA AAAGATTAAT 001440 001441 AGAATAAGGG TTTATTCTAT TAATAGGCAA TTTGGGGCTG CTACAGTGGC TCCATGATAC CAATGGTTCT GGGCTCTTTC 001520 001521 TTTTCCGCTA TCCTTAGTAT ATGGCCTTCT TCCTCCTGCT TGCAAAATGG TGGCATACAG AAGCCTTTCC TACATATTCC 001600 001601 AGAATATGAA GAAAGACAAG GGGGGAAAGG GACGTGCCAA CTGGTTAAAC AACAATCACC ATATCAAAGA CCCACCCACT 001680 001681 AGATTTCTTC TTCTTACTGG CCAGAACTTT GTAGCGTGCC CACCCTCTAT ACACAACAGG CTGCAAAGGA GGCTGGAATA 001760 001761 TCACGTTTTA GTTGGGCAGT GACTATCCAG TGCAAAATCC AGATTCCGTT AGTAAAGGAT GTTGATGGAG TGGATGGATA 001840 001841 TTAAACAGAG ATTCAACTTT CCTGTTCAGA AACGTGTTAT AACTCCATAT ATTGCTTTAA TTCTATCTAT CCTAGATAGA 001920 001921 CTTACAAGGC TAGAATAAGA CCTTTAGAGG CACTAACCAA CCACCAAAAA GAGGCTAATC ACCTCCCATA TGTTGTAAAT 002000 002001 CAAATTGTAC AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT025386_smProtein_1493:1681 |
Length | 63 |
Molecular weight | 6947.9505 |
Aromaticity | 0.0967741935484 |
Instability index | 71.2693548387 |
Isoelectric point | 8.76983642578 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0425817974837 |
Amino acid sequence | MIPMVLGSFFSAILSIWPSSSCLQNGGIQKPFLHIPEYEERQGGKGTCQLVKQQSPYQRP TH |
Secondary structure | LLLEEHHHHHHHHEEELLLLLLLLLLLLLLLEELLLLLLLLLLLLEEEEEEELLLLLLLL LL |
PRMN | - |
PiMo | - |