NONHSAT026230
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026230 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5402 nt |
Genomic location |
chr12+:7260904..7274447 |
Exon number |
12 |
Exons |
7260904..7261077,7261269..7261543,7262660..7262743,7262894..7263168,7263621..7264202,7264603..7264660,7267726..7267815,7267982..7271273,7271495..7271622,7272096..7272149,7273102..7273221,7274308..7274447 |
Genome context |
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Sequence |
000001 GAGCCTCACA GCAAAGCCCT CTGGAGCCTT GATGTCCGTG CTGCTCTCTT GGCCTTTGCC ATACGGCTCT GGGTACCCGG 000080
000081 GGGATGTCAG CTGCTGGGGT AGCTCTTGGG CCAAGAGGAC GGAGCCCCGG GTTGGGCAAG CCTGGAGGAC TCCCCAGAGA 000160 000161 AGCAGCCACC ACCTCCTCCC GCGCAGCCTG AGCTCTAGGA TTGTGGGTTT TCCATCCTCC GAAGACATCA CCTTTGCTCA 000240 000241 TCTCCCAGGA GAGTCTCGTC CAAAGGAGGG GGGTGCTTTC TGCTTCAGCA GATCCCACCC CACCCTGGGA TCCGAGGGAG 000320 000321 CAATGGTGGG GCGAGTGAGG GTCTGCCGTA AATATCCCCC GACCACCCTC TGGGAAGGTG CTAGAGGCCA CAGGCAAATT 000400 000401 TCAGTCTCCC CATGGAATAT CTGCTGTGCT GCTGCTGCTG CTGCTGCTGG CTAGAGAGAT TTAGGAGAGC CACAGTCTAT 000480 000481 GGCTACAAGG AGATGATAAG AGAGTGATGG CCAGGACAGA TGCAATGTCT CAGAACTCTT AGGGTCACCT GGAGCACCTT 000560 000561 GGGAGCCAGA GATGCAGCCA AAGAGTGAAC AATGGTACCA ATCCCAAGAC CCATGTGTTA AGAAGAAACC AGCCAAGACT 000640 000641 CAGATCAGGA TTGGGGAGTC CACCCCTCGT TTCCCTTCAG AGCATTATTT CCTTGTTTGC TAAGAGGGGC AGGAACTGGA 000720 000721 AAACTCAGGC TAGCCCATCT GAGAAGACTT TCCTGGAGAT GAGCTGGAGG AGGGAGGAGT AAGGCCTTGG AAGGAAACTC 000800 000801 CAGGACAGCA CCACCTCCCC TACACTGGGA CCTCGTCTCT AACTGGCAGA GTGGTCAATG AAAAAAAGGG CATGCCTTGG 000880 000881 CACATCGTGG TCAAACTGCT AAAAGCCAAA GACAAGAGAA AATCTTTTCT TTTTTTTAAT CCCATCCTAA AGACTAGACA 000960 000961 GAACAATATT TTCAATGTCA CTCTTTTCTC ATCAAAACCA ATATAGACCA GAAGACAGTG GAATATCTCT AAAATGCTGA 001040 001041 AGGAAAAAAA AAGTCAACTC AGAATTGTTT TTCTAGTGAA AGTATTCTTC CAGAATGAAG ATGAAATAAA GCTATTTTCA 001120 001121 GATAAAAGAA AACAGAGATT CTTGTCGCCA GCAGACCTCC ACTATGAGAA GCGCTAAAGA AAGTTCTTTA GGACGGGCAC 001200 001201 GATAGCTCAC GCCTATAATC CCAGCATTTT GGGAGGCCAA GGTGGGAGGA TTGCTTGAGC TCGGAAGATG GAGGCTGCAG 001280 001281 TGAGCCATGA CGGTGCCACT GCACTCCAGC TTGGGTGACA GAGTGAGACG CTGTCTCAAA TTGGAAGAGC AGAGCTGCAG 001360 001361 ACAGGAATAA GAAGAACGGT AAATTTGAAG ATGGGACCGT CTAGTTGCAA GAAAACAAGC TCAGGGCTCC CACTGATTCT 001440 001441 ACATTACGGG CTGTGGGTTC CTTGAGGGAG GAATTTTGTC CTGCAGGCTG TGGCAGCCCT AGGACTCAGC ACATCTAGGT 001520 001521 GTCCACCTGC GTCTGTGGTG AGAAGCCTGA TCATTGCCAC GTGACCGCCT CCTCACTGTT GGTACCTGGT TGTAGAGAGC 001600 001601 AGCTCTGTGA GTAGAAGGAG AAGGATCCTG CCCTGGAGAG GGCCTGGCTG GTCCTCACCT GGGGCCTATC ATTTAGTAAC 001680 001681 AGGGCTTCTG GAAGTGGTAG CAGATCTGGG CCTGGTGGGC ATTCTGCTTC TCCTGGGTGG CAGCAGAAGT CCCTAGGTGG 001760 001761 CAGGCTGGGG ACTGCCCAAA GGTTCTGACT CAGGAAGAGC ACAGTGGAAC AGAAAGCCCT TGTACCACCT TCGCTGCTGT 001840 001841 ATTCGTCCAT TCTCACACTG CTGTACAGAA CTACCTGAGA CTGGGGAATT CATGAAGAGA AGAAGTTTAA TTGACTCACA 001920 001921 GTTCTGCGGG CTTAACAGGA AGCATGACTG GGAGGCCTCA GGAAGCTTAT AATCATGGCA GAAGGCGAAG GGGAAGCAAG 002000 002001 GACCTTCTTC ACATGGCAGC AGGAGAAAGA GAAGAAGGGA GAAGTCTACA CACTTTTAAA CAACCAGATC TCATGAGAAT 002080 002081 TCCATCGGGA GACAGCACTA GGGGGATGGC ACTAAACCAT TAGAAACTGC CCCCATGATC CAATCACCTC TCACCAGGCC 002160 002161 CCTCCTCCAA CACGTGGGGA TTACAATTCC ACATGAGATT TGGTTGGGGA CATAGAGCCA AATCCTATCA GCTGGTATCC 002240 002241 TCCTTTTTCC AGGCTTTAGA TATGGCACAA CCTGATGGCT TCTGCATAAA GCCTCCTCTC ATCTGCATCT CTCCACCTCA 002320 002321 CTCACCCTCT TTTCAGCAAA GAACCCTCTG GCTCTAGTTT CACTGTGGTG GTCCTGGGAG AGGTAGAGAA GACCCAGAGG 002400 002401 CTCCTTACCC TGGGAGGTCA AACTGACCAT CCAGGTTTGG CTCTTCCCTG CTGGTGTGTC TAGAACACCA TCTTCCCCTT 002480 002481 ATTGCTGTGG ACTTCAGGGC TCTGCTGCTC TGTCCTCCAC AGAACTTGTC AATCAGCTTC CTACCAGCTA AGATCTGGTG 002560 002561 CTGTCTGATA TATCCTCCCT GCGGCTTGTC ACTCATGCTG TCTAATGGCG TGAGGTGCAT TGAGTTGTAT TCTGATGTCT 002640 002641 TTGTCCTTTT GAAGCCACAG AGTAAGGTCA CACAACTTTG AAACGAGCAG GGTACCATCT GAAGATGCTG GACATTCCTT 002720 002721 TTAACAATTA CCTAGGGGAG AGGCAGTCCT CAGACAGGAC TCAGGTGGGT GGGCCTCAAA GAGGAAGGGA AAGGGGGCAG 002800 002801 CTGCCTGCCT CTGAACTTCA CTCTCTAGAC TCGTGGAAGG GTCTAGCTTA GAGCTAGGAT GGGAGGGCTG TGAGCACTGA 002880 002881 GGATGGAGTC ATGCCTTTTT GTGACTGGAC ACATTTTTAC TGCCCGAAGT CATCTACTGC CCCCACCCCC CAACCCCATT 002960 002961 CTTCTGCCCA CTTAGCGAAT ATTGAGGTTA TGGTCAGGAT GGGGTCATTT GCAATGAAAT TCAAGGTTGA GACTATGTTG 003040 003041 CAGTTATCTG TCTGCTTGTA AAAAGTCACC CCCACATTTT GTTTAAAACA GCAAGTATGT ACTATTTCAC ACAGTTTCTG 003120 003121 TGGGTCAGGA ATCCAGAAGC GGCTGAGATG GGTAGTTTAG GATCAGGGTC TCTCACAAGG CTTTGGTCCA GGTGCAGGCT 003200 003201 GCAGTCCTCC AGAGGCGGGA CTGGGGCTGG AGGTCTGCTT CCAGACGGTC ACTCACATGG ATGTGGGCAG GCGGCCTCAG 003280 003281 TTCCCTGCCA CATGGCCCTC CTCATAGGAC GCTTGAGTGT CCTCGCGGCA TAGCAGCTGG CTTTCCCCAG AGTGACCCAA 003360 003361 GGTGGAAAGA ACAAGGCAGA GGTGACAGTG TCTTTTATAA GCCAGCCTTG GAAGTGACGT AGCATCATTT CTGCCTTATT 003440 003441 CCATTGGTCA CACAGACAAC CCGATGTGGA AGGAGACATC ACAAGGACAG GAATACTGGG AAGCAGGTAT TGTTGGTGGC 003520 003521 TGTCTCGGAC GCTGGTTCTC ATAGAAGTAG ATGTATTATT TTAGTACAAT AAGTGCAGAC GATCAGCTAG CAGGATGTTA 003600 003601 TTTTTGCTGG GTATGGTTGT ATTTCAGGTG CATTTACCCA AATCCAGAGT ACCTTTGGGG GCTCTGACCC TCTCCTCCTC 003680 003681 CACCTTGAGA TCTGTAGAGG CCTCTCGTTC ATCCCACCAA GAGCAGGACT GGACAGATGA AAGCATGGCT TACAGGAGGC 003760 003761 CAACACAATA GGAGGTAGGG CTTTGGGAAG ACAGCATAGG TTTCAAAAGA ACCAAGAAGC TGTTGAAAAG GAGAGCAGAT 003840 003841 GGGCAGGGAA GACAAGTCCC AGATAGAATG CCCTTTGCAA CCTAGGGGGA GCTGACCACA GTGTGCATCC TGACACTCGA 003920 003921 AGACAAGGTC TCCATCAGCA GATTGCCCAA CAGAACAAGT TCAGAGCCCA GAGATCCCAG TTCCAGATCT CAGATCTCCC 004000 004001 ACACCCTGTG GGCTCTGTGT GGACTTTCGT CCTGAAACAA AGTCCTTTAG TAAAGGACTC TTTAAATTCA CTCCATCTGT 004080 004081 GCTTTGCTTG CCAATAGCAG GGTGCGTCTG TTACATACTG GACTATCCCT TCCTTCAATA TGTTCATGGC TGAGGCTGCA 004160 004161 TTTGTGCCTC AGATAATCAA GGTGAGTATA ACTCTCTGTT CTGTTTCCCT TTTGTTTCCT CCAAGACTTT AATAAACCCT 004240 004241 CATTCAAGAG GCCCACCTTG TCCCACCTGT GCTTCTCAGA AAAGAAGGAG TGGTGGGGAG ACAGGCTGGG GTGGGGGCTT 004320 004321 TGCCACCTGG CTGCCCCTTC ACCTGTGGGT TCTTGCTCCA GTGAGGACCC AGCAGGATAA GCTTTAGTTT CATTAAGGGT 004400 004401 GACAATAGTT TCCTTACAGC TGGGTCAAGG ATATGAGCGA GCCTCTTCCG AAAACAGCCG GGAAGGGAGA GGAATCCAAG 004480 004481 AGGAGGAGCA GGTGGGAAAG ACAAGACAGA AGGTGGATCG GGACCAGGCC TGGGAGGGAG CACAGGCACA CAGAAGTGAA 004560 004561 AGAATTCGCC TGAGGTTACA CGACTCCTCG AGCGGTGCCT TTAGCTCTGC ATTGTGCCAC CTGCCTGGGT CAAGGAAGAT 004640 004641 GCCACCGCTG TTGTTCTGTG TACAGAGAGG GAAAGGAAGA TGCTGGCTCT CAGCAGTTCT ATAGAACAGA GGATGGAGAG 004720 004721 GCCACACGAC AATAGGCACA CGCACCGTAC ATTGAAGAAG TGCATGCAAG ACAGAATCGT GTGGGATATG CACACTTGCG 004800 004801 TGGAAGAAAA ACTGTTCCAT TCACATTGAG AAGAAGAAGA AGAAGAGGAG GAGGAGGAGG AGGAAGAAGA AAGATGGTGA 004880 004881 GATATCCTGC AGGAGACCAG GGCCAGGAGG GTGGAGGCCT CTCAAGAAGA GGGAAGCATG AGGAAGCTCC AGGGCAGGAT 004960 004961 GGTTTACCTG CCTGGACAGC AAGATGATGG CTACACTAGC CCCCATTCTC TGGGCGCCTG GATTTGCCCA CCAGATCTCC 005040 005041 TCACCTCTTG CCCTTCACCT CCTGCTGTAC CTACAAGGTC TCCCCGATTC TCATCTGCCC ATAATCATGG ACACAGCCCC 005120 005121 AGGATGTGCA GGACTCTCAG GGACCATCTG GAGTTCCAGC TGGAATCTGG GCCTGGTGGA GTGGGAGTGG GGCAGGGGCC 005200 005201 TGCATTGGGC TGACTTAGAG AGCACAGTTA TTCCATCCAT ATGGAAATAA ACATTTTGGA TTCCTGATCA CAAAAAAAAA 005280 005281 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 005360 005361 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT026230_smProtein_4937:5212 |
Length | 92 |
Molecular weight | 9758.9517 |
Aromaticity | 0.0549450549451 |
Instability index | 62.9736263736 |
Isoelectric point | 8.63641357422 |
Runs | 10 |
Runs residual | 0.0235805860806 |
Runs probability | 0.0441618088677 |
Amino acid sequence | MRKLQGRMVYLPGQQDDGYTSPHSLGAWICPPDLLTSCPSPPAVPTRSPRFSSAHNHGHS PRMCRTLRDHLEFQLESGPGGVGVGQGPALG |
Secondary structure | LLLLLLEEEELLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLL HHHHHHHHHHHHEEEELLLLLEEELLLLLLL |
PRMN | - |
PiMo | - |