NONHSAT026230

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT026230

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5402 nt

Genomic location

chr12+:7260904..7274447

Exon number

12

Exons

7260904..7261077,7261269..7261543,7262660..7262743,7262894..7263168,7263621..7264202,7264603..7264660,7267726..7267815,7267982..7271273,7271495..7271622,7272096..7272149,7273102..7273221,7274308..7274447

Genome context

Sequence
000001 GAGCCTCACA GCAAAGCCCT CTGGAGCCTT GATGTCCGTG CTGCTCTCTT GGCCTTTGCC ATACGGCTCT GGGTACCCGG 000080
000081 GGGATGTCAG CTGCTGGGGT AGCTCTTGGG CCAAGAGGAC GGAGCCCCGG GTTGGGCAAG CCTGGAGGAC TCCCCAGAGA 000160
000161 AGCAGCCACC ACCTCCTCCC GCGCAGCCTG AGCTCTAGGA TTGTGGGTTT TCCATCCTCC GAAGACATCA CCTTTGCTCA 000240
000241 TCTCCCAGGA GAGTCTCGTC CAAAGGAGGG GGGTGCTTTC TGCTTCAGCA GATCCCACCC CACCCTGGGA TCCGAGGGAG 000320
000321 CAATGGTGGG GCGAGTGAGG GTCTGCCGTA AATATCCCCC GACCACCCTC TGGGAAGGTG CTAGAGGCCA CAGGCAAATT 000400
000401 TCAGTCTCCC CATGGAATAT CTGCTGTGCT GCTGCTGCTG CTGCTGCTGG CTAGAGAGAT TTAGGAGAGC CACAGTCTAT 000480
000481 GGCTACAAGG AGATGATAAG AGAGTGATGG CCAGGACAGA TGCAATGTCT CAGAACTCTT AGGGTCACCT GGAGCACCTT 000560
000561 GGGAGCCAGA GATGCAGCCA AAGAGTGAAC AATGGTACCA ATCCCAAGAC CCATGTGTTA AGAAGAAACC AGCCAAGACT 000640
000641 CAGATCAGGA TTGGGGAGTC CACCCCTCGT TTCCCTTCAG AGCATTATTT CCTTGTTTGC TAAGAGGGGC AGGAACTGGA 000720
000721 AAACTCAGGC TAGCCCATCT GAGAAGACTT TCCTGGAGAT GAGCTGGAGG AGGGAGGAGT AAGGCCTTGG AAGGAAACTC 000800
000801 CAGGACAGCA CCACCTCCCC TACACTGGGA CCTCGTCTCT AACTGGCAGA GTGGTCAATG AAAAAAAGGG CATGCCTTGG 000880
000881 CACATCGTGG TCAAACTGCT AAAAGCCAAA GACAAGAGAA AATCTTTTCT TTTTTTTAAT CCCATCCTAA AGACTAGACA 000960
000961 GAACAATATT TTCAATGTCA CTCTTTTCTC ATCAAAACCA ATATAGACCA GAAGACAGTG GAATATCTCT AAAATGCTGA 001040
001041 AGGAAAAAAA AAGTCAACTC AGAATTGTTT TTCTAGTGAA AGTATTCTTC CAGAATGAAG ATGAAATAAA GCTATTTTCA 001120
001121 GATAAAAGAA AACAGAGATT CTTGTCGCCA GCAGACCTCC ACTATGAGAA GCGCTAAAGA AAGTTCTTTA GGACGGGCAC 001200
001201 GATAGCTCAC GCCTATAATC CCAGCATTTT GGGAGGCCAA GGTGGGAGGA TTGCTTGAGC TCGGAAGATG GAGGCTGCAG 001280
001281 TGAGCCATGA CGGTGCCACT GCACTCCAGC TTGGGTGACA GAGTGAGACG CTGTCTCAAA TTGGAAGAGC AGAGCTGCAG 001360
001361 ACAGGAATAA GAAGAACGGT AAATTTGAAG ATGGGACCGT CTAGTTGCAA GAAAACAAGC TCAGGGCTCC CACTGATTCT 001440
001441 ACATTACGGG CTGTGGGTTC CTTGAGGGAG GAATTTTGTC CTGCAGGCTG TGGCAGCCCT AGGACTCAGC ACATCTAGGT 001520
001521 GTCCACCTGC GTCTGTGGTG AGAAGCCTGA TCATTGCCAC GTGACCGCCT CCTCACTGTT GGTACCTGGT TGTAGAGAGC 001600
001601 AGCTCTGTGA GTAGAAGGAG AAGGATCCTG CCCTGGAGAG GGCCTGGCTG GTCCTCACCT GGGGCCTATC ATTTAGTAAC 001680
001681 AGGGCTTCTG GAAGTGGTAG CAGATCTGGG CCTGGTGGGC ATTCTGCTTC TCCTGGGTGG CAGCAGAAGT CCCTAGGTGG 001760
001761 CAGGCTGGGG ACTGCCCAAA GGTTCTGACT CAGGAAGAGC ACAGTGGAAC AGAAAGCCCT TGTACCACCT TCGCTGCTGT 001840
001841 ATTCGTCCAT TCTCACACTG CTGTACAGAA CTACCTGAGA CTGGGGAATT CATGAAGAGA AGAAGTTTAA TTGACTCACA 001920
001921 GTTCTGCGGG CTTAACAGGA AGCATGACTG GGAGGCCTCA GGAAGCTTAT AATCATGGCA GAAGGCGAAG GGGAAGCAAG 002000
002001 GACCTTCTTC ACATGGCAGC AGGAGAAAGA GAAGAAGGGA GAAGTCTACA CACTTTTAAA CAACCAGATC TCATGAGAAT 002080
002081 TCCATCGGGA GACAGCACTA GGGGGATGGC ACTAAACCAT TAGAAACTGC CCCCATGATC CAATCACCTC TCACCAGGCC 002160
002161 CCTCCTCCAA CACGTGGGGA TTACAATTCC ACATGAGATT TGGTTGGGGA CATAGAGCCA AATCCTATCA GCTGGTATCC 002240
002241 TCCTTTTTCC AGGCTTTAGA TATGGCACAA CCTGATGGCT TCTGCATAAA GCCTCCTCTC ATCTGCATCT CTCCACCTCA 002320
002321 CTCACCCTCT TTTCAGCAAA GAACCCTCTG GCTCTAGTTT CACTGTGGTG GTCCTGGGAG AGGTAGAGAA GACCCAGAGG 002400
002401 CTCCTTACCC TGGGAGGTCA AACTGACCAT CCAGGTTTGG CTCTTCCCTG CTGGTGTGTC TAGAACACCA TCTTCCCCTT 002480
002481 ATTGCTGTGG ACTTCAGGGC TCTGCTGCTC TGTCCTCCAC AGAACTTGTC AATCAGCTTC CTACCAGCTA AGATCTGGTG 002560
002561 CTGTCTGATA TATCCTCCCT GCGGCTTGTC ACTCATGCTG TCTAATGGCG TGAGGTGCAT TGAGTTGTAT TCTGATGTCT 002640
002641 TTGTCCTTTT GAAGCCACAG AGTAAGGTCA CACAACTTTG AAACGAGCAG GGTACCATCT GAAGATGCTG GACATTCCTT 002720
002721 TTAACAATTA CCTAGGGGAG AGGCAGTCCT CAGACAGGAC TCAGGTGGGT GGGCCTCAAA GAGGAAGGGA AAGGGGGCAG 002800
002801 CTGCCTGCCT CTGAACTTCA CTCTCTAGAC TCGTGGAAGG GTCTAGCTTA GAGCTAGGAT GGGAGGGCTG TGAGCACTGA 002880
002881 GGATGGAGTC ATGCCTTTTT GTGACTGGAC ACATTTTTAC TGCCCGAAGT CATCTACTGC CCCCACCCCC CAACCCCATT 002960
002961 CTTCTGCCCA CTTAGCGAAT ATTGAGGTTA TGGTCAGGAT GGGGTCATTT GCAATGAAAT TCAAGGTTGA GACTATGTTG 003040
003041 CAGTTATCTG TCTGCTTGTA AAAAGTCACC CCCACATTTT GTTTAAAACA GCAAGTATGT ACTATTTCAC ACAGTTTCTG 003120
003121 TGGGTCAGGA ATCCAGAAGC GGCTGAGATG GGTAGTTTAG GATCAGGGTC TCTCACAAGG CTTTGGTCCA GGTGCAGGCT 003200
003201 GCAGTCCTCC AGAGGCGGGA CTGGGGCTGG AGGTCTGCTT CCAGACGGTC ACTCACATGG ATGTGGGCAG GCGGCCTCAG 003280
003281 TTCCCTGCCA CATGGCCCTC CTCATAGGAC GCTTGAGTGT CCTCGCGGCA TAGCAGCTGG CTTTCCCCAG AGTGACCCAA 003360
003361 GGTGGAAAGA ACAAGGCAGA GGTGACAGTG TCTTTTATAA GCCAGCCTTG GAAGTGACGT AGCATCATTT CTGCCTTATT 003440
003441 CCATTGGTCA CACAGACAAC CCGATGTGGA AGGAGACATC ACAAGGACAG GAATACTGGG AAGCAGGTAT TGTTGGTGGC 003520
003521 TGTCTCGGAC GCTGGTTCTC ATAGAAGTAG ATGTATTATT TTAGTACAAT AAGTGCAGAC GATCAGCTAG CAGGATGTTA 003600
003601 TTTTTGCTGG GTATGGTTGT ATTTCAGGTG CATTTACCCA AATCCAGAGT ACCTTTGGGG GCTCTGACCC TCTCCTCCTC 003680
003681 CACCTTGAGA TCTGTAGAGG CCTCTCGTTC ATCCCACCAA GAGCAGGACT GGACAGATGA AAGCATGGCT TACAGGAGGC 003760
003761 CAACACAATA GGAGGTAGGG CTTTGGGAAG ACAGCATAGG TTTCAAAAGA ACCAAGAAGC TGTTGAAAAG GAGAGCAGAT 003840
003841 GGGCAGGGAA GACAAGTCCC AGATAGAATG CCCTTTGCAA CCTAGGGGGA GCTGACCACA GTGTGCATCC TGACACTCGA 003920
003921 AGACAAGGTC TCCATCAGCA GATTGCCCAA CAGAACAAGT TCAGAGCCCA GAGATCCCAG TTCCAGATCT CAGATCTCCC 004000
004001 ACACCCTGTG GGCTCTGTGT GGACTTTCGT CCTGAAACAA AGTCCTTTAG TAAAGGACTC TTTAAATTCA CTCCATCTGT 004080
004081 GCTTTGCTTG CCAATAGCAG GGTGCGTCTG TTACATACTG GACTATCCCT TCCTTCAATA TGTTCATGGC TGAGGCTGCA 004160
004161 TTTGTGCCTC AGATAATCAA GGTGAGTATA ACTCTCTGTT CTGTTTCCCT TTTGTTTCCT CCAAGACTTT AATAAACCCT 004240
004241 CATTCAAGAG GCCCACCTTG TCCCACCTGT GCTTCTCAGA AAAGAAGGAG TGGTGGGGAG ACAGGCTGGG GTGGGGGCTT 004320
004321 TGCCACCTGG CTGCCCCTTC ACCTGTGGGT TCTTGCTCCA GTGAGGACCC AGCAGGATAA GCTTTAGTTT CATTAAGGGT 004400
004401 GACAATAGTT TCCTTACAGC TGGGTCAAGG ATATGAGCGA GCCTCTTCCG AAAACAGCCG GGAAGGGAGA GGAATCCAAG 004480
004481 AGGAGGAGCA GGTGGGAAAG ACAAGACAGA AGGTGGATCG GGACCAGGCC TGGGAGGGAG CACAGGCACA CAGAAGTGAA 004560
004561 AGAATTCGCC TGAGGTTACA CGACTCCTCG AGCGGTGCCT TTAGCTCTGC ATTGTGCCAC CTGCCTGGGT CAAGGAAGAT 004640
004641 GCCACCGCTG TTGTTCTGTG TACAGAGAGG GAAAGGAAGA TGCTGGCTCT CAGCAGTTCT ATAGAACAGA GGATGGAGAG 004720
004721 GCCACACGAC AATAGGCACA CGCACCGTAC ATTGAAGAAG TGCATGCAAG ACAGAATCGT GTGGGATATG CACACTTGCG 004800
004801 TGGAAGAAAA ACTGTTCCAT TCACATTGAG AAGAAGAAGA AGAAGAGGAG GAGGAGGAGG AGGAAGAAGA AAGATGGTGA 004880
004881 GATATCCTGC AGGAGACCAG GGCCAGGAGG GTGGAGGCCT CTCAAGAAGA GGGAAGCATG AGGAAGCTCC AGGGCAGGAT 004960
004961 GGTTTACCTG CCTGGACAGC AAGATGATGG CTACACTAGC CCCCATTCTC TGGGCGCCTG GATTTGCCCA CCAGATCTCC 005040
005041 TCACCTCTTG CCCTTCACCT CCTGCTGTAC CTACAAGGTC TCCCCGATTC TCATCTGCCC ATAATCATGG ACACAGCCCC 005120
005121 AGGATGTGCA GGACTCTCAG GGACCATCTG GAGTTCCAGC TGGAATCTGG GCCTGGTGGA GTGGGAGTGG GGCAGGGGCC 005200
005201 TGCATTGGGC TGACTTAGAG AGCACAGTTA TTCCATCCAT ATGGAAATAA ACATTTTGGA TTCCTGATCA CAAAAAAAAA 005280
005281 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 005360
005361 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AA
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Predicted Small Protein

Name NONHSAT026230_smProtein_4937:5212
Length 92
Molecular weight 9758.9517
Aromaticity 0.0549450549451
Instability index 62.9736263736
Isoelectric point 8.63641357422
Runs 10
Runs residual 0.0235805860806
Runs probability 0.0441618088677
Amino acid sequence MRKLQGRMVYLPGQQDDGYTSPHSLGAWICPPDLLTSCPSPPAVPTRSPRFSSAHNHGHS
PRMCRTLRDHLEFQLESGPGGVGVGQGPALG
Secondary structure LLLLLLEEEELLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
HHHHHHHHHHHHEEEELLLLLEEELLLLLLL
PRMN -
PiMo -