NONHSAT026810
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026810 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4402 nt |
Genomic location |
chr12+:9520060..9550213 |
Exon number |
4 |
Exons |
9520060..9522192,9528454..9528682,9547127..9547253,9548315..9550213 |
Genome context |
|
Sequence |
000001 AGTTGGCCCT TAGATCATGA GACCAGCCTA AGTGCCCAAG GAAATGGAAC AGCAGGGAGG GGGAGGGACA TCACATCCAC 000080
000081 TATCAAAACT TCTTGTTAGT CTCTGGCTTC CACATCCTTT CCCAAAACTT CAGCCCAATT CACAGCCGCA TTTTTCCATC 000160 000161 TCTTTGCCAT TCCTCCATGG GAGAGCTTTC TGTTGGTACA GGAATAGCTG AGAAGTGGGA AAGATCAAGG GTAGTAAGAG 000240 000241 CTGCCCCCGA TAATCTACAG AAAGCTTTGC TGGAATGAGG TTGTGCATCT CTGAACCTGA GCTAGATTTG TTGGGTCAGG 000320 000321 GACCATACTT ATTTACTGGC CCAAGAATTA GAAGAGGAGG TGTCTAAGAA ATGCTTGTTG AATGAATAAA TAAACAGCCG 000400 000401 AGTGAGTGTT TATATGAGCC TGAAAACTGC CTGCACCAGC ACAAAAGTAA AGCCCCAACA CCCTCAGGTC ACACCTACTG 000480 000481 GAAAAATATA TGTCAGCCCC AGAAAAATGT GGGCAACATG AGGCAACTCC GGAGCAACAC AGGAAACTGC CCTCCTCTTC 000560 000561 TGGCCCCTCT TCCACTGTGA TGCTCAAAGT CTGTGATGAC CAAGTCTGGT CATCTAATCA GCAGGATATA AGAGGGTCAT 000640 000641 TCTTCACTGC GGCCATTCCA GTTTCCTGGA AACTTGGCTT TCTCCTGACC GTTTCCCCAT GAGCACGGTG GTGACAAGCT 000720 000721 TGAGCTCTGA CATCAGAAAG TCCCCAGTTT GAAACCTCTA GCTTCTTACT CGCTAGCTAT GAGACTTTGG GCAAATTAAT 000800 000801 CTCTAAACCT CAATTTCTCA ATCTGTAAAA TGTTCAAGGT CAAGCAACTC ACTTTTCCAC ATTGTAATTG ATGAAATTAA 000880 000881 AATTCAGACT CAGATCTGCC TCACTCCACA GTCTGTGCTT TTTCCTTCCC ACTCATCTTT TTCTCTTTCT ATTAAAAATT 000960 000961 TCATAACACA TTTGAGATTC TGTCTCAACT CATATCACTG AAATCATCTG TCACGTCTGA TGATCATATA GAAGCCAGAC 001040 001041 TAAGATTCAG CCACAAATGT TATGCCTAAA CATTTCTTAT TATTTCTTTT TAATGTTTCT CATGTATACA ATCAAACTCG 001120 001121 CACCCTAGTA TTATTGGCAG GCTAATATAT GCCCATGAGA CATGTAGCTT AAATCTCTAT GGGATAGGAT AAATATTCTC 001200 001201 CGTTTGTTTG TGATTTGAAA GCTTTCCATG GATGCTAAAG CGATTTGTTA AAATACCTTC ACCTGTAAGT GTTTTTCCTC 001280 001281 TCTTAAAAGC CTAATTCATC TCTGAGTTTG TTTACTAAAA TAATCTAATT TGCTCATTTT CTCTAGCCAT TCCAAGCTAA 001360 001361 ATCCCAGGAA GTACTAAAGA AGCAATGCAC AGACACAGTA TCATACAATT TGAGACACAG TATTATACAA TTGATGTGAA 001440 001441 CTTCTAGGCA CAGTGTGCTC ACAGTCTGTC TGGAAATAAC TTTGTAGCAA GCATAGTTCC AGTCTAGCTG CCTGGCAGCC 001520 001521 TGGCAGGATA TTATTATTAC TGATACTAAT TTACTTTTTA ATGTAAGTCT ACCCAGAATA TATTAAAGAA GTTTCAAGAA 001600 001601 ATCAGGATCA TGGATTATAA CCTGACGTAG TGCTAAGGAA CCATCAGTTC CATGTAAGCA TTTGGTTAGC AAGTCTTTTT 001680 001681 CAAAGGCCAT GCTTGAGAAA CAGTTTTGCT CTCCCAAACA ATGTGTTGTA GTTTTTTTTA GCATACTACT GTGCAGATAA 001760 001761 ATAAATGAGA TATTAATGCC ATTGCAAGTT CTGGCTTTGT GTAGAGTTTT CTAGTGAAGC CTGTTTAGGA TCCTGGATTT 001840 001841 GTCCAAGCTG TTCTGATTAT CCCATCATTT TTAACATGGA TAATCTACAA TCTTTCATCT ATTACATAAA TTGAATTCTG 001920 001921 GCACAAGTTC AACTGCTCTT CATTGAAACT GAGAAAAATT TTAGGATCAC TTTGCTGGAA TCCAAAGAAG ATGTTAAATA 002000 002001 CTACCAAAAA AAAAAGGCTG AAAACTGGTT TCCAAGAATC TCTGGGGCAT CCTTAAGAAC TCCCCTTGCA TGTTCATTAG 002080 002081 ACGGCCCTTT TACCCAATGT ATCTCTAATA GTCTGCTGAA AATACTCAAA GGAGTCCTCA TTAGAGGGAA GCAGAAAGAC 002160 002161 CAAAGTCAGA GACGGAGATG TGGCCGTAGA AGCAGAGGTC CATGTGCTGC GGGGCCATGA GCCAAGGAAC CCACGCCGCC 002240 002241 TCTGGGAACT GGGAAAGGCA AGGGAGCAAC GTCTCCCTGG AGCTCCAGAG TGAGCCAGCC CTGATGACAC CGTGACTTCA 002320 002321 GCCCTCGGAG ACTGACTGTG GACATCGGAC CTCTGTCACT ATTTTCTGCA AACTAGGAAT AGAAGCAAGC TTCTTAACCT 002400 002401 GATGTATCGC ACCTTCAAAA AGCCTACAGC AAACATCTTA CTTAGTGATG AAAAACTGAT TGCCTTCCCC ATAAGATTGA 002480 002481 GAACCAGGAA CTGTCCAGGA AGACCCTGCA GTCTCTCTGC AGGCTCATGG GAGCTCCCAG AACTGAGACA ACACACGGAT 002560 002561 CCAGGCCTGC TTCGAAGTCA GTGGGATGCG GCCCTTGAAA GTCGATGTAT TGGGTTCCTA GGGCTCTCGT GAAAACATGC 002640 002641 CACACCTGGC TGGTTTTAAA CAACAGGAGT TTATTCTGTC AGTTGAGAAG GCTACAAGTG CAAAATCAAG GTATTGATGG 002720 002721 GATGAGTTCC AACTAGAGGC TGTGAGGCAG ATCAACTCCA TGGCTCTCTC CTGGCTTCTG CTGGTTTCTG GCAACCGTTC 002800 002801 ACTTCCCATG CCTGGTAGAC ACATCACTCT AACCTCTGCC TCCCTTTTTC ATGGGCACAT TCGCGCCTGT GTGTGTGTGT 002880 002881 GTGTGTGGAT GTGTGTGTTA AGGACAGCAA TCATTAGACT AGATGGGGCC CACTCTAATC CACTGTGAGC TTCTCTTACT 002960 002961 TTGGTAACAT CTGCAAAGAC CCTATTTCCA AACAAGGTCA CATTCCATGT TCTGGGACTG TCTTCTGAGA GATGTCTCCC 003040 003041 CCAGGATCCT TCCAGGTGGA AGGATGCCCT TTGACCTGCA AAGCCAGGCA GAAAACCAGG ATCAGGGCAG GACAAGAGGA 003120 003121 TGCTAGCCTG TGATGGCTCC CACTCAGGTG GGATGTGAGA AGTGCCTGTG GCCTGGGACA ACCAACTTGC TCCCGTTACC 003200 003201 TCATCTGAGA TGGACTGCAC AGTGTATGTC CAGGGCCCAA CCCGGCACAC TGTGCCTTTG CAATGCTGTC TCTGTGCTTT 003280 003281 GGAAATTCAC TCAGCCCACT GCGTGGGGTG GTCTGAGGCG GGCCACAACC ATTTCTCAAC CATCCCTGAG TACCTGACCA 003360 003361 GTATCCCTCG GGGGTGACGA CGACCGCCTA CATCTGGAGC ATGAGGAGCG TGTTTACCTG GTGAGTAGGG ATGCAAGCAT 003440 003441 AGGACGTCCT GGCCGATCCT CTGCACAAGC AATGCCTTTG CTCCAACGGG ATGGGCAACG TTGGATTAGG CCTGAGGCAG 003520 003521 ATTTGATCTC GGAAGATACA TTTGAGTCTA TGTGTTTTGT GCATTTATTT TTGTTTCCTT GAATTAACAT AGAGTCCATT 003600 003601 TCAACTTTCA CTTAGTCTCC TTTCTCTTCC CCCACTTCTT TCTCTCTCTC TCTTTCTTTG TATGTGGAAG AATTTTAACT 003680 003681 CTGTGTTCCA TAATGTCTAA ATACTCAAAT TTAGAGTTGA CAGCCATACA GCAAATTATT CAAGTTGCTG TCAAAAAAAA 003760 003761 AAAATCCCTG CGTTTTCTAG GATTAAAACT GTGAATAGAG TACTGGAAAA AAAAAAGTCA TAGACTCAGA TGCAAAATGA 003840 003841 CAACATTTAA TGGGATGATA AGGAAATAAG ACTTGACAAG AAACCATAGC CCACTGCAGA CTGTTCACGA TGTCAGATGG 003920 003921 TTCATGATTT TTTTCCAGGT TTGATACAGA AGAATCAGTT TGTTACAAGA AATGCTTCTC CAACTGGGAT TTAAAACATC 004000 004001 ATTTAAACAA TAAACACGTT TGTATGTATA TATAAATAGA TATTTAGATA TAAAAACATG CATATATAGG CACATAGACA 004080 004081 TGTACATACA CACACATATG TACAAATATA TATGCCTAAA TTTTTACTGA CCTGTCAACT TACAAAACAA AAATGAGAGA 004160 004161 TTTATAAAAG GTACATATAT AGCTGTGAAT TCTTTAAAGC TATTTTTAAA GAAATTAATA TAATCTTAAT GATTATCAGA 004240 004241 TTACTCATGC AGTACACAGC TACACAAGTC TAATGAAGTA CCAGACACTT TTCTTTCTTC AACTATTGTC CTATCTTATT 004320 004321 CAGGTTTTCA TTTTCTTACT AGATGTGTTT TCAATGGTTT ATGACGTAAT AAAATTTCTT TACCTCAAAA AAAAAAAAAA 004400 004401 AA |
Predicted Small Protein
Name | NONHSAT026810_smProtein_2759:2947 |
Length | 63 |
Molecular weight | 6797.124 |
Aromaticity | 0.0483870967742 |
Instability index | 50.0677419355 |
Isoelectric point | 9.47125244141 |
Runs | 10 |
Runs residual | 0.00764976958525 |
Runs probability | 0.056827415651 |
Amino acid sequence | MALSWLLLVSGNRSLPMPGRHITLTSASLFHGHIRACVCVCVWMCVLRTAIIRLDGAHSN PL |
Secondary structure | LHHHHHHHHLLLLLLLLLLLEEEEELHHHLLLLEEEEEEEEEEHHHHHHHHHHHLLLLLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL LL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiii ii |