NONHSAT026810

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT026810

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4402 nt

Genomic location

chr12+:9520060..9550213

Exon number

4

Exons

9520060..9522192,9528454..9528682,9547127..9547253,9548315..9550213

Genome context

Sequence
000001 AGTTGGCCCT TAGATCATGA GACCAGCCTA AGTGCCCAAG GAAATGGAAC AGCAGGGAGG GGGAGGGACA TCACATCCAC 000080
000081 TATCAAAACT TCTTGTTAGT CTCTGGCTTC CACATCCTTT CCCAAAACTT CAGCCCAATT CACAGCCGCA TTTTTCCATC 000160
000161 TCTTTGCCAT TCCTCCATGG GAGAGCTTTC TGTTGGTACA GGAATAGCTG AGAAGTGGGA AAGATCAAGG GTAGTAAGAG 000240
000241 CTGCCCCCGA TAATCTACAG AAAGCTTTGC TGGAATGAGG TTGTGCATCT CTGAACCTGA GCTAGATTTG TTGGGTCAGG 000320
000321 GACCATACTT ATTTACTGGC CCAAGAATTA GAAGAGGAGG TGTCTAAGAA ATGCTTGTTG AATGAATAAA TAAACAGCCG 000400
000401 AGTGAGTGTT TATATGAGCC TGAAAACTGC CTGCACCAGC ACAAAAGTAA AGCCCCAACA CCCTCAGGTC ACACCTACTG 000480
000481 GAAAAATATA TGTCAGCCCC AGAAAAATGT GGGCAACATG AGGCAACTCC GGAGCAACAC AGGAAACTGC CCTCCTCTTC 000560
000561 TGGCCCCTCT TCCACTGTGA TGCTCAAAGT CTGTGATGAC CAAGTCTGGT CATCTAATCA GCAGGATATA AGAGGGTCAT 000640
000641 TCTTCACTGC GGCCATTCCA GTTTCCTGGA AACTTGGCTT TCTCCTGACC GTTTCCCCAT GAGCACGGTG GTGACAAGCT 000720
000721 TGAGCTCTGA CATCAGAAAG TCCCCAGTTT GAAACCTCTA GCTTCTTACT CGCTAGCTAT GAGACTTTGG GCAAATTAAT 000800
000801 CTCTAAACCT CAATTTCTCA ATCTGTAAAA TGTTCAAGGT CAAGCAACTC ACTTTTCCAC ATTGTAATTG ATGAAATTAA 000880
000881 AATTCAGACT CAGATCTGCC TCACTCCACA GTCTGTGCTT TTTCCTTCCC ACTCATCTTT TTCTCTTTCT ATTAAAAATT 000960
000961 TCATAACACA TTTGAGATTC TGTCTCAACT CATATCACTG AAATCATCTG TCACGTCTGA TGATCATATA GAAGCCAGAC 001040
001041 TAAGATTCAG CCACAAATGT TATGCCTAAA CATTTCTTAT TATTTCTTTT TAATGTTTCT CATGTATACA ATCAAACTCG 001120
001121 CACCCTAGTA TTATTGGCAG GCTAATATAT GCCCATGAGA CATGTAGCTT AAATCTCTAT GGGATAGGAT AAATATTCTC 001200
001201 CGTTTGTTTG TGATTTGAAA GCTTTCCATG GATGCTAAAG CGATTTGTTA AAATACCTTC ACCTGTAAGT GTTTTTCCTC 001280
001281 TCTTAAAAGC CTAATTCATC TCTGAGTTTG TTTACTAAAA TAATCTAATT TGCTCATTTT CTCTAGCCAT TCCAAGCTAA 001360
001361 ATCCCAGGAA GTACTAAAGA AGCAATGCAC AGACACAGTA TCATACAATT TGAGACACAG TATTATACAA TTGATGTGAA 001440
001441 CTTCTAGGCA CAGTGTGCTC ACAGTCTGTC TGGAAATAAC TTTGTAGCAA GCATAGTTCC AGTCTAGCTG CCTGGCAGCC 001520
001521 TGGCAGGATA TTATTATTAC TGATACTAAT TTACTTTTTA ATGTAAGTCT ACCCAGAATA TATTAAAGAA GTTTCAAGAA 001600
001601 ATCAGGATCA TGGATTATAA CCTGACGTAG TGCTAAGGAA CCATCAGTTC CATGTAAGCA TTTGGTTAGC AAGTCTTTTT 001680
001681 CAAAGGCCAT GCTTGAGAAA CAGTTTTGCT CTCCCAAACA ATGTGTTGTA GTTTTTTTTA GCATACTACT GTGCAGATAA 001760
001761 ATAAATGAGA TATTAATGCC ATTGCAAGTT CTGGCTTTGT GTAGAGTTTT CTAGTGAAGC CTGTTTAGGA TCCTGGATTT 001840
001841 GTCCAAGCTG TTCTGATTAT CCCATCATTT TTAACATGGA TAATCTACAA TCTTTCATCT ATTACATAAA TTGAATTCTG 001920
001921 GCACAAGTTC AACTGCTCTT CATTGAAACT GAGAAAAATT TTAGGATCAC TTTGCTGGAA TCCAAAGAAG ATGTTAAATA 002000
002001 CTACCAAAAA AAAAAGGCTG AAAACTGGTT TCCAAGAATC TCTGGGGCAT CCTTAAGAAC TCCCCTTGCA TGTTCATTAG 002080
002081 ACGGCCCTTT TACCCAATGT ATCTCTAATA GTCTGCTGAA AATACTCAAA GGAGTCCTCA TTAGAGGGAA GCAGAAAGAC 002160
002161 CAAAGTCAGA GACGGAGATG TGGCCGTAGA AGCAGAGGTC CATGTGCTGC GGGGCCATGA GCCAAGGAAC CCACGCCGCC 002240
002241 TCTGGGAACT GGGAAAGGCA AGGGAGCAAC GTCTCCCTGG AGCTCCAGAG TGAGCCAGCC CTGATGACAC CGTGACTTCA 002320
002321 GCCCTCGGAG ACTGACTGTG GACATCGGAC CTCTGTCACT ATTTTCTGCA AACTAGGAAT AGAAGCAAGC TTCTTAACCT 002400
002401 GATGTATCGC ACCTTCAAAA AGCCTACAGC AAACATCTTA CTTAGTGATG AAAAACTGAT TGCCTTCCCC ATAAGATTGA 002480
002481 GAACCAGGAA CTGTCCAGGA AGACCCTGCA GTCTCTCTGC AGGCTCATGG GAGCTCCCAG AACTGAGACA ACACACGGAT 002560
002561 CCAGGCCTGC TTCGAAGTCA GTGGGATGCG GCCCTTGAAA GTCGATGTAT TGGGTTCCTA GGGCTCTCGT GAAAACATGC 002640
002641 CACACCTGGC TGGTTTTAAA CAACAGGAGT TTATTCTGTC AGTTGAGAAG GCTACAAGTG CAAAATCAAG GTATTGATGG 002720
002721 GATGAGTTCC AACTAGAGGC TGTGAGGCAG ATCAACTCCA TGGCTCTCTC CTGGCTTCTG CTGGTTTCTG GCAACCGTTC 002800
002801 ACTTCCCATG CCTGGTAGAC ACATCACTCT AACCTCTGCC TCCCTTTTTC ATGGGCACAT TCGCGCCTGT GTGTGTGTGT 002880
002881 GTGTGTGGAT GTGTGTGTTA AGGACAGCAA TCATTAGACT AGATGGGGCC CACTCTAATC CACTGTGAGC TTCTCTTACT 002960
002961 TTGGTAACAT CTGCAAAGAC CCTATTTCCA AACAAGGTCA CATTCCATGT TCTGGGACTG TCTTCTGAGA GATGTCTCCC 003040
003041 CCAGGATCCT TCCAGGTGGA AGGATGCCCT TTGACCTGCA AAGCCAGGCA GAAAACCAGG ATCAGGGCAG GACAAGAGGA 003120
003121 TGCTAGCCTG TGATGGCTCC CACTCAGGTG GGATGTGAGA AGTGCCTGTG GCCTGGGACA ACCAACTTGC TCCCGTTACC 003200
003201 TCATCTGAGA TGGACTGCAC AGTGTATGTC CAGGGCCCAA CCCGGCACAC TGTGCCTTTG CAATGCTGTC TCTGTGCTTT 003280
003281 GGAAATTCAC TCAGCCCACT GCGTGGGGTG GTCTGAGGCG GGCCACAACC ATTTCTCAAC CATCCCTGAG TACCTGACCA 003360
003361 GTATCCCTCG GGGGTGACGA CGACCGCCTA CATCTGGAGC ATGAGGAGCG TGTTTACCTG GTGAGTAGGG ATGCAAGCAT 003440
003441 AGGACGTCCT GGCCGATCCT CTGCACAAGC AATGCCTTTG CTCCAACGGG ATGGGCAACG TTGGATTAGG CCTGAGGCAG 003520
003521 ATTTGATCTC GGAAGATACA TTTGAGTCTA TGTGTTTTGT GCATTTATTT TTGTTTCCTT GAATTAACAT AGAGTCCATT 003600
003601 TCAACTTTCA CTTAGTCTCC TTTCTCTTCC CCCACTTCTT TCTCTCTCTC TCTTTCTTTG TATGTGGAAG AATTTTAACT 003680
003681 CTGTGTTCCA TAATGTCTAA ATACTCAAAT TTAGAGTTGA CAGCCATACA GCAAATTATT CAAGTTGCTG TCAAAAAAAA 003760
003761 AAAATCCCTG CGTTTTCTAG GATTAAAACT GTGAATAGAG TACTGGAAAA AAAAAAGTCA TAGACTCAGA TGCAAAATGA 003840
003841 CAACATTTAA TGGGATGATA AGGAAATAAG ACTTGACAAG AAACCATAGC CCACTGCAGA CTGTTCACGA TGTCAGATGG 003920
003921 TTCATGATTT TTTTCCAGGT TTGATACAGA AGAATCAGTT TGTTACAAGA AATGCTTCTC CAACTGGGAT TTAAAACATC 004000
004001 ATTTAAACAA TAAACACGTT TGTATGTATA TATAAATAGA TATTTAGATA TAAAAACATG CATATATAGG CACATAGACA 004080
004081 TGTACATACA CACACATATG TACAAATATA TATGCCTAAA TTTTTACTGA CCTGTCAACT TACAAAACAA AAATGAGAGA 004160
004161 TTTATAAAAG GTACATATAT AGCTGTGAAT TCTTTAAAGC TATTTTTAAA GAAATTAATA TAATCTTAAT GATTATCAGA 004240
004241 TTACTCATGC AGTACACAGC TACACAAGTC TAATGAAGTA CCAGACACTT TTCTTTCTTC AACTATTGTC CTATCTTATT 004320
004321 CAGGTTTTCA TTTTCTTACT AGATGTGTTT TCAATGGTTT ATGACGTAAT AAAATTTCTT TACCTCAAAA AAAAAAAAAA 004400
004401 AA
[back to top]

Predicted Small Protein

Name NONHSAT026810_smProtein_2759:2947
Length 63
Molecular weight 6797.124
Aromaticity 0.0483870967742
Instability index 50.0677419355
Isoelectric point 9.47125244141
Runs 10
Runs residual 0.00764976958525
Runs probability 0.056827415651
Amino acid sequence MALSWLLLVSGNRSLPMPGRHITLTSASLFHGHIRACVCVCVWMCVLRTAIIRLDGAHSN
PL
Secondary structure LHHHHHHHHLLLLLLLLLLLEEEEELHHHLLLLEEEEEEEEEEHHHHHHHHHHHLLLLLL
LL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL
LL
PiMo ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiii
ii