NONHSAT026857
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT026857 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1681 nt |
Genomic location |
chr12+:10124104..10148293 |
Exon number |
5 |
Exons |
10124104..10124286,10131565..10132123,10133181..10133332,10134619..10134728,10147617..10148293 |
Genome context |
|
Sequence |
000001 AAATTATAGG TCCTGTTTAA CATTCAGCTC TGTTAACTCA CTCATCTTTT TGTGTTTTTA CACTTTGTCA AGATTTCTTT 000080
000081 ACATATTCAT CAATGTCTGA AGAAGTTACT TATGCAGATC TTCAATTCCA GAACTCCAGT GAGATGGAAA AAATCCCAGA 000160 000161 AATTGGCAAA TTTGGGGAAA AAGCACCTCC AGCTCCCTCT CATGTATGGC GTCCAGCAGC CTTGTTTCTG ACTCTTCTGT 000240 000241 GCCTTCTGTT GCTCATTGGA TTGGGAGTCT TGGCAAGCAT GTGTATGTAC TGCCCCTGTT TTTGTCAAGA GGAAGTATCT 000320 000321 AGAATTTCAA ATATTTAGCA ACAAAAGTTT ATTCCTTCAG TGGAAGATTT ATAATAATGA TAGGTGATAG GCCCACAAGG 000400 000401 AGGACTTACA ATGTGGAACT TAGTCTCTTT CCCTCACTCC TGTAGAGTAA TTGCTTTCCC TACCCCTTTA ATCTTTATAC 000480 000481 TACTTCTGCA AATGATAAAG GATGATGGCT CTATTGAGAA TTTACAATTT TTTGTCATTT TTTTAATGTG GAGTTCACGT 000560 000561 AACTTTGAAG ATAGAAATGA AAAAAATGAA CAAACTACAA AACATCAGTG AAGAGCTCCA GAGAAATATT TCTCTACAAC 000640 000641 TGATGAGTAA CATGAATATC TCCAACAAGA TCAGGAACCT CTCCACCACA CTGCAAACAA TAGCCACCAA ATTATGTCGT 000720 000721 GAGCTATATA GCAAAGAACA AGAGCACAAA TGTAAGCCTT GTCCAAGGAG ATGGATTTGG CATAAGGACA GCTGTTATTT 000800 000801 CCTAAGTGAT GATGTCCAAA CATGGCAGGA GAGTAAAATG GCCTGTGCTG CTCAGAATGC CAGCCTGTTG AAGATAAACA 000880 000881 ACAAAAATGC ATTGGAATTT ATAAAATCCC AGAGTAGATC ATATGACTAT TGGCTGGGAT TATCTCCTGA AGAAGATTCC 000960 000961 ACTCGTGGTA TGAGAGTGGA TAATATAATC AACTCCTCTG CCTGCAGGTA AGTGACCCAG CTGCTGCTTC TATAACCCAT 001040 001041 AGTAGTGACT TGGACTGAGA GAAGAGGGAA TCTCAAGAAT AAGAGTTTCC AGTACTCCCT CCTATTCTAA GTGTCCAGTG 001120 001121 ACTTACATAT TTTCTGAGAT AACCGAGCCA TCCTCCCACT TCCAGACCTC ATTCGACTTC TGGCGAGATA ATCCGACCCA 001200 001201 ACGAATTAAA TGAGTCCTGG CTTTGATGTA CTCCTATTGT AAACATAAAT AAACACAATG GTCAGAATCC CTCCACAGCT 001280 001281 CTTGGTATGA TAGACAAAGC TTCATGATAA GACGTTGGAC AAAAAATGTT GGATTACATG TCTATATTAG TATTAATGGA 001360 001361 TTACATTTGA TGTTTGAAAT TGTACCAATT TGACTTGTCT GAGAACTTAA AAAAAACTTA TAGGACACAG GTAAAATTGT 001440 001441 ACACAAAATA GCTGATATTC TAATCTTCTT TTGTGTTTAT AACATGTATT TAGATCTTCA ACCAGTTGAG GATTATACTC 001520 001521 CCAAATAGAA TACCAAATAT GATTCAAAGG AATAAATGTA AACAGAGAAA GGAAATACAA AGAAATACAT TGTTGATGAG 001600 001601 CTGTATATTC CTTAGAGTTA AAGCCCTACC TGCTTTGGTT TTATTGCTCA GCTTGCCTAT AAAATCTTAC ATATGGAAGT 001680 001681 A |
Predicted Small Protein
Name | NONHSAT026857_smProtein_92:337 |
Length | 82 |
Molecular weight | 9010.5434 |
Aromaticity | 0.0864197530864 |
Instability index | 72.212345679 |
Isoelectric point | 4.71514892578 |
Runs | 14 |
Runs residual | 0.0306597988717 |
Runs probability | 0.042666616196 |
Amino acid sequence | MSEEVTYADLQFQNSSEMEKIPEIGKFGEKAPPAPSHVWRPAALFLTLLCLLLLIGLGVL ASMCMYCPCFCQEEVSRISNI |
Secondary structure | LLLEEEEHHHHLLLLLHHHHLHHHLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHLLHH HHHHLLLLLLLHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT TTToooooooooooooooooo |