NONHSAT027419
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027419 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
678 nt |
Genomic location |
chr12+:27199085..27219276 |
Exon number |
4 |
Exons |
27199085..27199165,27213760..27213926,27217209..27217429,27219068..27219276 |
Genome context |
|
Sequence |
000001 agacagggtc tcgctttgcc acacaggctg gagtgcaatg gcacagtcat agctcactgc aacctcagcc ttccACAttt 000080
000081 gAGACATTGT AAGTTCAGAG GCCTGAGAGT TAGCATCCAG AGGCAGCAGA CACCAGCAGC ACAGCTGTTT CTCCCGCAGG 000160 000161 ATCATTGCCA GCAGAACATC CTACACCAAT GGCTCTTTGG GCAGGATCTT GGCTGTGCTT TGTCTGTCTA GCTTCATGCC 000240 000241 TAAGTTTGCC AAGAGCCCTG ATCCAGGTGA AGTGTGTAAA CCTTGCACGT GGAATTCCCA GCAAAGAAGC TGTAGGGATC 000320 000321 GGGATAGGGC CTGGGAAGTG TCTGACTTAC AGAAACCCAC CATGTCTTGT TCTCTGCTGG AGACCTCTGC TTCTCCATCT 000400 000401 TGTGAACATC CACAGGCCCC CTGCACCGTA ATCTTGCCCT CTTACTGTTG ACTCAGTCCT CATGGAAGTT ATAAAAGAAC 000480 000481 TTGTGTGGAT TAGCTTGCTA AATACATCCA AGATTTGAAG AACTGAAAAC AAAATCAGTA TTAAACCTGC TTTTTAAAAA 000560 000561 TGTAAGTGAA GTAACTTCTG GCCATGGTTC ATTTCAGACC TCTCTAAAGC CTGCAATTAC CTCTCAGTGT ATGTGAATTT 000640 000641 TTTTCCAGGA GTAAAGTTAC TTGACTCTAG TGAGTCTA |
Predicted Small Protein
Name | NONHSAT027419_smProtein_188:430 |
Length | 81 |
Molecular weight | 8687.5467 |
Aromaticity | 0.0625 |
Instability index | 45.2125 |
Isoelectric point | 9.43817138672 |
Runs | 12 |
Runs residual | 0.0111842105263 |
Runs probability | 0.0623564741211 |
Amino acid sequence | MALWAGSWLCFVCLASCLSLPRALIQVKCVNLARGIPSKEAVGIGIGPGKCLTYRNPPCL VLCWRPLLLHLVNIHRPPAP |
Secondary structure | LLLLLLLHHHHHHHHHHLLLHHHHHHHHHHHHLLLLLLLLEEELLLLLLLEELLLLLLEE EEEEHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHH HHHHHHHHHHHHHLLLLLLL |
PiMo | ooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTT TTTTTTTTTTTTTooooooo |