NONHSAT027453
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027453 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5172 nt |
Genomic location |
chr12-:27928015..27933186 |
Exon number |
1 |
Exons |
27928015..27933186 |
Genome context |
|
Sequence |
000001 CCGGGCGGGG CGCCGAGGGA TGGCGGCCCG GGAGGAGCGG CGAGGTGAgg gccgcccgcg ctcgcccggc ctctccggcg 000080
000081 gcccctcctc ccggggcccg ctcccgcgag gcggcggccc TGCCCTTCTC CTTTCCCTCA GCGCCAAAAA AGGGCCGGCG 000160 000161 GAGCGCGGCG GGCGTCCTCG CGCGGGCTCT CCCGGGCGGC GCCAGGCGGG AAGGGAATTC CAGCTCCCAG CCAGCAGCCT 000240 000241 CCTCCCCCGC CGCCCTTCTC ACTTCCGCCC GCGGGACCCC AGCCGCCGGC CTGACCTGCC GGCTGGATCC GGCTCTCGGG 000320 000321 GAGGCCCGGG AAGCTGCGGG CCCGGGCGCC TCGGCTGCGG ACGCGCAGCT GCGGGAGGCG GAGGGCGCGC GTCCCCGCAG 000400 000401 CCTCTccgcc cgcccggggc gcgccggctc cgccgcTTGT TGGGGGCTGC AGTGATGCTC CGGGGTACCC CAGGGAGAAG 000480 000481 AAATTCGTTT TCTCTCCCAC GCTGCTTTAC ACGGGCTAAA GAAAAAGAAA TGAGCGTGGG AGGAAAGGGA AGGATGGAGT 000560 000561 CTCTGGTCCA GGGAGACAAA AAGGCATCAA ATATGGGGTC GTCCTTCTGG CCCAGTCCGG CATCGAGTGT CAGTGGGCTG 000640 000641 AGGCACGCAG GCGATCTATG GACAGTTGGT GGCAATGTTG GTGGCACGTA GAGCTGATTC TCTGGTAGCG TGGTCGCGTA 000720 000721 GGAGCCATCT TACAGGAGGT CCAGGCAGAT GGCAGCAGGT TCTCAGAGGA ATCGGGTTGG GAGGCAGGGG AGCTTGCATT 000800 000801 TGCCACTGGG GCCCCTTATT CTCCCTAAGT TATTAAAAGA AAGATGAAAG CGCAGCCCGA CTAAATAAAG TTACATCACG 000880 000881 TGGCTTCTGG TTTTAAACCA TGTTTTCTAT GAGCCATTGC TTTTCTACTT CAGTCCAGTC CATTACGGAA TGTTATCCTG 000960 000961 GCGCAAAAGA TCTGACAAAA TTGGCTCATA AATGTCTGCA AGAAGTAGCT TTTCTTGTCA CCCCCTTTCT CCACCTACCC 001040 001041 TGCCCCCATC ATCTGAGGAC TATTAAGAGA GACCACACGT GCGGTTTggc tgagcgcggt ggctcacgcc tgtaatccca 001120 001121 tgactttggg aagcccaggt gggcagatca cgaggtcagg agttcgagag caccatggcc aacatggtga aaccccgtct 001200 001201 ctactaaaaa tacaaaaatt agccgggcgt ggtggcacgc gcctgtgatc ccagctactc gggaggctga ggcaggagaa 001280 001281 ttgctggaac ccgggaggcg gaggttgcag tgagccgaga tcgcgccact gcactccagc ctgggcgaca gagcgagacg 001360 001361 ccgtctcgga aaaGAGAGAC CACTTGTTTC CTATGTTCTC TCACTGAACA TTGCAATTAG AAGGCCCACC CCAAATAATA 001440 001441 ATAGGAAGGA CTTTTTGTCT TGCTAATGAA TTCATCCCAG GAAGGGGGTG GGGGGAGAAA TATATTGTTT GGATTATCTT 001520 001521 TGGGTAGGAG AAGGGAGAAG GATTGGGAGG AAGCAGAGGG TGTGTTCACT CTTATCTTAC AAAACAAAAA CAGAAAACCT 001600 001601 TGAAAACTTA CCCCAAACCA AGATTTGAGA ACCACCTATG ATAAACAGTC CTTAACTTGG AGAGAATATG TGTTTGGTTT 001680 001681 TTTTTTTTAT TATTACAAGC TTCAGCTTTC TTCTTGAATG ACAGATTGTT AAATAATATC TTCTTCATAA GTACATTTCC 001760 001761 CCTATTTAAA GAAGATACAT CCTACCATGC TAACATTTTA CCTTAGGAAG GAGAAAGGGT TAAAAACCAG AGAACTAAAA 001840 001841 GAAAGTCAAA GGTGAAACAT GAGATCCTTT CAACATAGTT TGGTTACATT TGTGGTTCTT ACTACGAAAT TTATCTGCTT 001920 001921 CACAGAGAGG TGTTGTTGTC ATCTTTTACT TTGTTTATTA TTATTACTTG GGAAAGGAGG TTTATCTTTT TATTTTTTAG 002000 002001 AAAAAAAAAT GCAttttttt ttttttttga gacagagttt ccctcttgtt gcccaggctg gagtgcaatg ctgcgatctc 002080 002081 agctttctgc aacctccacc tcccgggttc aagtgattct cctgcctcag cctccggagt agctgggatt ccaggcatga 002160 002161 gccaccacac ccggctaatt ttgtattttt agtagagacg gggtttcacc atgttggtca ggctggtctg gaactcccga 002240 002241 cctcacgtga tccacccacc tcggcctccc aaagtgctgg gattacaggc atgagcctcc atgcccagcA AAAAAAAATG 002320 002321 CAtttttttt ttccatagag atagggtctt gctaccttgc ccaagacaga cctcaaactc ctggccccaa gggatcctgc 002400 002401 caccccaagt gatcctgctg ccttggtctc tcaaagcact ACTGTGCCTG GCCTATTTTC TTTATAATAA TGCTAGGAAT 002480 002481 AAGGAACTAA AAAATAAAAG ACATAGAAAA TGTTCTAGTA GATTCTGGCC TCCCTGGAAA AAAATGAAGG AAATAAAAAT 002560 002561 GGATCTATGA CTTACTCAGT TGTTTTCTTG GATTCTATAA AAAACATTCA TCTCTTCACC TTGTTTCACC TGGCCTTTAA 002640 002641 ATCGTTACTG ATAAAACTCC ATTTTCACAT CAACCCTTCA CACTTCCATT CTCTATGAGG GTGCAGTGAG ACACGATAAG 002720 002721 CTTTGGAGCA GGAGGTGGAG TGAGTGATCA AGCATTTAGC AGCTTCTTTG GGATGGTAGA GTGTAACATC CAGTATTAAG 002800 002801 CATCAGGCTG GGGAATTTTG CTGGGATGCG TCCCCTGTAT CAAAGAGACT TGGACCTACG ATTTTTCTAT GCCTCAACCG 002880 002881 GCAACAATGC CAGATTCAGT GGGTCAGCCA CAAAGAACAG GCTCTCAGTC TCTCCTCTGT CTCTTGAATC TTTCACCAAT 002960 002961 GGATGCTTTT GTTTCCCAGC CGTCATAGAT ATGCCTCAGA CTGGTATTTT CTTGCCTTTT TAAAACAGAC CAAAAAAATC 003040 003041 ATGCTCAAAG AATGATGTGC ATTAGAAAGG CAATTCAAGC ACAGTAACAT TATCAGGGTA AGATGAGGTT GGACAGGGAG 003120 003121 TCTGGGGTAT TAGTCTCACA ATACTGGGCA TTGATCTTGT GAGTTTTTTT GGCTCCCAAT ATGATAATAA CATTATTTAG 003200 003201 GATTGGGAGC ATCTTAAATG ATCAAATCAT TTTAATAAAT TATGCAGTAA GTTTTCTGTT AAGCTAGAAA TGCAAAGTCA 003280 003281 GAGCAATATA AACTCCTTTA TTTTAAAAAG ACCTAAAATT ATTCCTAGTC TTCCTGAAAA TATTGCTTTA TATAACTGGA 003360 003361 GGTATAATTT TATAGATCTG TTATTGACTG ATCATTGAAT AATAAAAACC AGTTTTGTGG TACTATCTGT AAAACAGTTT 003440 003441 TACAGAAGCG TAATGGTCAA ATAGAGTTAG GTAAttttta ttttttattt tttatttttt tagacagggt ctcactctgc 003520 003521 cattcaggct ggagtgtggt ggcactatta tggctcaatg aagcctccca ggttcaagtg ctcctcccag aggcctccca 003600 003601 ggttcaagtg ctcctcccac ctcagcctcc caagtagctg agaatacagg cctgcgccac tatgcccggt taattcttac 003680 003681 attttctgtg gggacggggt ttcaccatgt tgcccaggct ggtcttgaac tcctgggcgc aagtgatgct ccctcctcag 003760 003761 cctcccagag tgctgggatt acaggtatga gccaccacac ccagcTGAAG TAGGTCATTT TTTAAAGAAC TTATGGAAAA 003840 003841 TATCCCTTTT GAAATAGCAA GTAGAAAAaa aaatcttagt acaagatgtt tatcacagta ttgcttttaa taacaaaaaa 003920 003921 ttggaaaaca acataatgta taataatagt agctaatatg tattgagtgt ttagcatgtg ccaggcactg ttgtaagtgc 004000 004001 tttacatgga ttacagtact gtttttatat tttacagctg aggaagctga agtgcagagT AAATTTTGGT ATGGTAGAAT 004080 004081 GAAATACCAA GGAGCCATTA GAAGTTTTTG TGTAGATCTT TCTTTAGGAT CACTGAAAAA TATACttttt tttttttttt 004160 004161 tttttgagac agtctcgctc ttgttgccca ggctggagtg cagtggtgtg atctcagctc actacaacct cagcctcctg 004240 004241 ggttcaagcc attctcctgt ctcagcctcc caagtagctg ggattacagg tgtctgccac cacgcctggc taatttttgt 004320 004321 atttttagta gaaacgggtt ttcaccatgt tggccaggct ggtcttcaac tcccaacttc aggtaatccg cccacctcag 004400 004401 cctcccaaag tgctgggatt acaggcgtga gccaccacgc ctggcTGAAA AATATACTTT TACATAAAGT TTAAAAAAAA 004480 004481 AAAACAGATT TTGGAACAGC ATATATGATT CCCTTTATGT AAACCTATAT ACTGTAAAAT AAAATTTATA GGAggccagt 004560 004561 gcagtgaccg attcctgtaa tcccagcact ttgggaggcc agggcgggag gattgcacaa gccaggagtt tgaggccagc 004640 004641 ctgggcaaca tagtgagacc ttgtctctac aaaaaaattt aaaaaTAAAT AAAATGTATA GACCATTGGT TTGTTTAGTA 004720 004721 tttatttgag acagggtctt gctctgttgc ctaagttgga gtgcagtggc acaaccacag ttcactgcag cctcaacctc 004800 004801 atgggcccca cctcaaccgg ctaatttttt aaaattttgt agagacaggc tctccctatg ttttccaggc tgatatcaaa 004880 004881 actcctgggc tcaaagcaat tctccctctt cgaccttaga aagtgttggg attataggtg tgagccaccg caccAGCCAa 004960 004961 gaccattggt ttgaactgag ctcctgcact agccccaaca gatgaaacca aaatggagtt actcatggtg atgttccatg 005040 005041 atgccaccaa gccagaacca agatctgtat ctgatctttg aaaaaatcag gagagagata ataaccaaat ccccagacag 005120 005121 gccgctttta accagtatga taaggcagtg ccctctgctt taacctttac aa |
Predicted Small Protein
Name | NONHSAT027453_smProtein_2300:2569 |
Length | 90 |
Molecular weight | 10756.8525 |
Aromaticity | 0.123595505618 |
Instability index | 61.4584269663 |
Isoelectric point | 10.395690918 |
Runs | 15 |
Runs residual | 0.0253359770875 |
Runs probability | 0.0245775186952 |
Amino acid sequence | MPSKKKCIFFFHRDRVLLPCPRQTSNSWPQGILPPQVILLPWSLKALLCLAYFLYNNARN KELKNKRHRKCSSRFWPPWKKMKEIKMDL |
Secondary structure | LLLLLEEEEEELLLEEELLLLLLLLLLLLLLLLLLLEEELLHHHHHHHHHHHHHHHLLLL HHHHLHHHLLLLLLLLLLHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiii |