NONHSAT027960
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT027960 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1356 nt |
Genomic location |
chr12+:48357367..48361954 |
Exon number |
6 |
Exons |
48357367..48357416,48357992..48358206,48359065..48360012,48360466..48360515,48360991..48361044,48361916..48361954 |
Genome context |
|
Sequence |
000001 TTTGGCGCCT GCGCGCTGAG TGCGTGCCGC TCCGCCGACC GAAGAGGCTG GACATGACAC CAGTGGCATA TCACGGCCAT 000080
000081 GGGGTCTCAG CATTCCGCTG CTGCTCGCCC CTCCTCCTGC AGGCGAAAGC AAGAAGATGA CAGGGACGGT TTGCTGGCTG 000160 000161 AACGAGAGCA GGAAGAAGCC ATTGCTCAGT TCCCATATGT GGAATTCACC GGGAGAGATA GCATCACCTG TCTCACGTGC 000240 000241 CAGGGGACAG GCTACATTCC AACAGAGCAA GTAAATGAGT TGGTGGCTTT GATCCCACAC AGTGATCAGA GATTGCGCCC 000320 000321 TCAGCGAACG TGAGTTACCT GCTTCTCACC TGTTAATACC TACTTCTGTC CCTAATCTCT TTCTGTATGT ATGAATGCCA 000400 000401 GTTAATTCTT TGAAAACTAC ACATGTTCTT ATAAGTTCCC CATTTTCCTT ATAACTGTTT GCCCAAGCAA GATATCTCTG 000480 000481 CCCCCATCAC AATCTGGGGA AAGAAACTTG AAGCTGGAAA TGCTTTGAAG GTCAAGGAAT GGAATCAGAA GAAACTGGGA 000560 000561 AAGTGGAGTG TTCTGGGAGG TGTGGGACTG TCTCTGTCCA CATAGCTCCT TTCTTCAGCT TTTCTTCCCA GAGTGCAAAC 000640 000641 AGTGTTTAAA GGAGTTTTAA AAGGTTTCTC CTGCTTCACT GCTTCTTAAC TGGTTTATGG TTCCTGGCTC TTGGAACTTC 000720 000721 CCTTTCAGCT CCCTTCTCTT TCCTGGTTTT GTGTTTAATC TTGACACATT GAACCTTGAT ATCTGACTGC CTGGGTCGGT 000800 000801 CATGTGCTGT GTCATTTGCA GTAAGCAATA TGTCCTCCTG TCCATCCTGC TTTGTCTCCT GGCATCTGGT TTGGTGGTTT 000880 000881 TCTTCCTGTT TCCGCATTCA GTCCTTGTGG ATGATGACGG CATCAAAGTG GTGAAAGTCA CATTTAATAA GCAAGACTCC 000960 000961 CTTGTAATTC TCACCATCAT GGTAAGCCTT AGGGTTTCAT TCCCTGGGTT GTGCACCTGC CAGGCTGGGA CCCAGGACAC 001040 001041 TTACACTTGT TTCCTGACTT GCCCTGATGT AGGCCACCCT GAAAATCAGG AACTCCAACT TCTACACGGT GGCAGTGACC 001120 001121 AGCCTGTCCA GCCAGATTCA GTACATGAAC ACAGTGGTCA GTACATATGT GACTACTAAC GTCTCCCTTA TTCCACCTCG 001200 001201 GAGTGAGCAA CTGGTGAATT TTACCGGGAA GGCCGAGATG GGAGGACCGT TTTCCTATGT GTACTTCTTC TGCACGGTAC 001280 001281 CTGAGATCCT GGTGCACAAC ATAGTGATCT TCATGCGAAC TTCAGTGAAG ATTTCATACA TTGGCCTCAT GACCCA |
Predicted Small Protein
Name | NONHSAT027960_smProtein_53:139 |
Length | 29 |
Molecular weight | 3070.6192 |
Aromaticity | 0.0714285714286 |
Instability index | 60.2857142857 |
Isoelectric point | 10.0974731445 |
Runs | 7 |
Runs residual | 0.0467806841046 |
Runs probability | 0.0170969288616 |
Amino acid sequence | MTPVAYHGHGVSAFRCCSPLLLQAKARR |
Secondary structure | LLLEEELLLLLLHHHLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |