NONHSAT029410
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT029410 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2558 nt |
Genomic location |
chr12+:70825517..70828074 |
Exon number |
1 |
Exons |
70825517..70828074 |
Genome context |
|
Sequence |
000001 TTATAAACTC AAATTCCAAG TATCAAATCG CAGGTCTCAG TGAACATCAA ACCTATTTAC TACATAGAAT CAAACCTTTG 000080
000081 TTTAGGTGAG ATGTACATCG TTAGTGGAGG AAAAACTGAC AACCTAATTT CATTTGTTTT CTTCTGATAC TCTTCAGACA 000160 000161 TGCCTCTATT AGAATAAAGG TAAACTGGAA TTTAAAGACA AGTTCCCCTC AGTTATTTCC ATGGAGCTGT AATATGTATA 000240 000241 TATGGAGTGA TGGTTTCCTG ACCTTTAGTC CACATACCAA TGTTTTCTTT TTTCTTTTTT TTTTTTTTTT TTGAGATGGT 000320 000321 GTCTCACTCT GTTGCCAGGC TGGAGTGCAG TGGCACGATC TCGGCTCACT ACAGTCTCCA CCTCCTGGGT TCAAGTCATT 000400 000401 CCTCTGCCTC AGCCTCCCGA GTAGCTGGGA CTACAGGCAC GCACCACCAC GCCTGGCTAA TTTTTTTGTA TTTTTAGTAG 000480 000481 AGACGGGGTT TCACCGTGTT AGCCAGGATG GTCTCAATCT CCTGACCTTG TGATCTGCCC ACTTCACCTC CCAAAGTGCT 000560 000561 GGGATTACAG GCCAATGTTT TCTTAATCTT AGAATGTGAA TAACTGAAAA TCATAGTCTG TGGAAAGGTG TTGAATTGAG 000640 000641 TATAATCTTC TTCTGTTTAT TTTTGTGTTT TGTTTTTTAA CAGATGGGTA TCTTGCTATG TTGCCCAGGA TGGAGTGCAG 000720 000721 TAGCTATTCA CAGGTATGAT CATAGCACAC TGCAGCCTCA AGCTCCTGGG CTCAAGCGAT CCCCCTCCCT CAGCCTCCCA 000800 000801 AGTATCTGGG GTTACTGGTG TGCACCACCG TGCTTGGCTC CAATAATTTT TTTTCTAATT CAAAAGTTAC AGTTTCACTG 000880 000881 TGAAAAAGGC CTTGAACACA CTATTTATGA CATCTTTTGA GGCAGCTCCA GTGCCTTGAC TTCAATCCCA GTTTCCGGTT 000960 000961 GCAGCATCCT TGTTGTCTTA GCAACACAGT GAACTATTCT GAAGCATAGA GTAACACGAA ACTGGGAGTC CGAGAAATAA 001040 001041 TCATCTCTGC ATCACATTAT GGGAGACGAA GTCTGCTTTA TCCATTTTAT CTTTATTCAG TTGTCTATGA TTAATTGATT 001120 001121 ACAGAGTAGT AGATTAGAAT AGTGCATGGA TATACATTTG TGTTGAAAAA AGGGGAAGTT GATATATATC AATCTTAGTT 001200 001201 TTCATTTATC AGTTTGATAT TCATGCATTT ACACTAAACG CTTCCATTTA TCCCGAAAAA GTATATGCAA CTGTATTCTG 001280 001281 TAGGTTGATT TTTGGAAAAG GGGAGAAGCA CACTGAATTC ATAAGGTCAC ATGTAGTCTT AAGGTCTTAC TTGCTTACAG 001360 001361 CCAATTAAAT TTGAAGCACC TTATTTATAC TTGTTAAAGG TAAAACCCAA AAGAACAAGC AGAGGACATT TTAAGGTCAT 001440 001441 AAAAGGTAAA TAAGCTTACC TTCTTAATGT TTTCATTCTC TTTTTGTATA AATCAGAAAA TGATCTAAAC TGCTGTAACA 001520 001521 AAGAGACCCC AAAATATGAT GGCTCATGTA AGATAATTTA TTTTTTTCTC ACATAGCAAT CCAGAAGTGG CTTCATTTCA 001600 001601 CAAGGTATTC AAGGGATATA GGAGTCATCT ACCTTGTTAG TTCTCTTAAT ACCCAAGGGT ATTGTTCTTT CCATGGTCAA 001680 001681 AGCTGGCTCA AGACTTCCTA GCCTGTGAAA AAAGAAGAAG GTGGAGCAAG CCATTTCCTT TTTAGGAAAT TACAGCCATC 001760 001761 ACTTCTGCCC ACCGTCCATT CATGAATACT TACTATATAG CTATACCTAG CTTCAAGAAA GCCTGGGACG TGTCTCTAAC 001840 001841 TAGATGGACA TGTGCCCTAC TAAAACTCCA GGGAAAGGGT TCTATTACTA AAGCTAAAAA GAGGGGAATG AATACTAGAG 001920 001921 TTAAAGACAA AAATGATAGC AGCCAATGGC CCATGCCGTG ATAATCTGCT GAGCAGGCAT GATGGAGATC CCTTGCCCAG 002000 002001 CAGAAAGTGT TCCTTGGTGA AATCATGAAT CTGCTATCTA GGAGAAACTC CCTTGTCCAT TGTCTTCTGT GGCCACTAGT 002080 002081 TTGACCTCTA GGAAAGTCTT GCTCGTCAGC TTCTGTGGCC CCGTCTGAAA CTTTTGAGGG ACATCGCAGC TTTTGCAGCC 002160 002161 CCTGCTTGCT GGTGCAGACT TTTAGACCTA GATTGCCTTA GAGACTGAAA AATATACGCT TTTATAGGCC GGGGTTTTAG 002240 002241 TTCATTTGAC TGTAATAAAG ACGTCAATGC CGTTTTTAAT GTTTGACTGC TGACATCTTT CAAGACTCAC CTTTCCCTTC 002320 002321 TCCCTTATGC TGCACATCTG GGCAAGCTGA TGGAAGCATG GGTGCCTCCT CCTTTGGCCC CAGCAGGAAG TTCAAATCAC 002400 002401 GCAAGCCCTG GCATGCATGC AGGAAGCTTC ACCCCAGCCT CACACTCTAA GACGGATAAA AGCCAAACCA ATTAAGCCGT 002480 002481 TTCTCGACCC TCCTGGGAGC CTGCCCTATC TCCCTGGAAA GTCTCAGTAT GTGAGTAATA AACCTTTTTA TACCCATT |
Predicted Small Protein
Name | NONHSAT029410_smProtein_683:919 |
Length | 79 |
Molecular weight | 8826.3424 |
Aromaticity | 0.128205128205 |
Instability index | 59.608974359 |
Isoelectric point | 7.67608642578 |
Runs | 9 |
Runs residual | 0.0182926829268 |
Runs probability | 0.0234057586999 |
Amino acid sequence | MGILLCCPGWSAVAIHRYDHSTLQPQAPGLKRSPSLSLPSIWGYWCAPPCLAPIIFFLIQ KLQFHCEKGLEHTIYDIF |
Secondary structure | LLEEEELLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHH HHHHHHHHLLLEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL LLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTi iiiiiiiiiiiiiiiiii |