NONHSAT031821
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT031821 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2221 nt |
Genomic location |
chr12+:127221553..127230800 |
Exon number |
4 |
Exons |
127221553..127221702,127227286..127228026,127229316..127229434,127229552..127230800 |
Genome context |
|
Sequence |
000001 GGGGTGGGGT TCATCCCACC CAGACCACAG AGACTGAAAA TAAGAAAGGG GTGAGGCCTA AGGGACAATC AGGATGTTTT 000080
000081 TCAGAGAGAA GTGTGGATGC TGGACAGGAA GAACCACAGA TACCAGATAC GGGACATACT TTATTCAGCT GGGTGCTGAA 000160 000161 AAAGAATCTT GGAAATTAGG AAACTGAATG AGGCCTCATT TCACACTCAG AATGTGGGTT GCAATAGTCA CTTCCTCTGC 000240 000241 TGCTGGGAAA GAAAGAATTA TACTACCTTT TGAATTTTGG ATTAAGGAGA GAGGTGTTGG CTTGTCAAAC TACCATGTAT 000320 000321 TCCTCAAGAC ATATTTTTGT GGCTTTATAA AATTCAATAT ATATGTCTAA ATTCAAAAAT ATTTTGTTGC AATCTGGCCC 000400 000401 TTGGACAAAC TGAGGCCCTA GCAACTGATG TTTATGGCTT TCCGTAGAAC CTTTCAGATA AAATTTACAC AGCATTTTAC 000480 000481 TGCAGCTATT TCACACAAAG CAGAGGATTT TGCCACAAAA CTGAAAGAAA AAAGAAACTG CATTCTTAAA TTTTTCATAA 000560 000561 ATCAAAAGGT ATAAAAATAT CTACCTAAAC GATAAAGGAG ATGAGAAACC CCACCCATGA TGGGAAGAAA GCCTATTTCA 000640 000641 GTTTTGCCTT TACTTCAAGT TCTTTTTTCC ATATCTGGAA TGCAATCAGA ATTTTAATCT TGCCTTGGGT TCCTCCTGGA 000720 000721 TTTGGGGAGA AGACAAAACC TGAAAATCTC TAATCTGCAT GTGTTCAGCT GCGTATCTTC TGGATACGGA AGGATCACAC 000800 000801 TGCACAGAGT GCTGGACTTG CAGGAGCCCC GCTTCTCAAC CTCCATCGCT TTATGAATGA ATTCACCAGA AAGAAAAGGA 000880 000881 AGAATCAACA CTTTCAGAGA TGGAGCCTGT TGAGCCACAG TACCAACTAG TCAATGCTGA ATCGACTTCT CCCTTTCTAC 000960 000961 ATTGCCTGAG AGAAGTCATT GGGGAATACT CTAGAGTCAA GGGATTGGAT TGTGGATTGC ATTGGTGGTT TTCCTCAGTT 001040 001041 TCCTCATCTT CTCCACAAGT TTCTACATAT CGAATGCAGA GCAGCCCTTC TTCAAAGGAC CTCCTACGGA AGCTGCTAAG 001120 001121 GAACTCAGTC TGTAGCTCTG CGTGGAGCCA TGTGTAAACA CTGAACTGAG ACCTGCCACC TCCTACTACC TAAGGGCCCA 001200 001201 TTTTCATCTG ATATCATCCC CCAGAAACAA ACTCATGATG ACTTCCATGT TTTTTTTAGA TTAGATACAT GGAGAATTTT 001280 001281 CCTTTCCCTT AGAATTAAAA TCCTGCATTC TAATTTTCAG TAAGCTTTTT TATTTCTGAA TAATTTTAAA TTTAAAGAGA 001360 001361 AGTTGCAAAG ATAGTATAGA ATGTTCCCTT ATACCTGTTT TTATTTAGAG TGATGTTCCC AGGAGAAATG ATAATGCAGC 001440 001441 AATGGACAAG AACAGGAACA AGAGACAGTC TTACCATCTT CTTACAATTT ATAGATGGGA CAGTGGAAAG AGAAGCCACA 001520 001521 TCGGGGTTGG GCATGCAGAG ACCTGGTCCT AAATCTGTGT GACTTTTGCG AAATCCTTTT GCCTCACAGA GCTCTAGGTT 001600 001601 CTTATCTGTC AAACAGGAAC CAGACCATCA GATCCGTAGA GATCCAACCA ATGAAGGAGA CTTCGAAAAC TTCACATTGC 001680 001681 CGTGTCAATG TGAGGTTGCT GGATGGTTAT GACAAGAAAT CACATTAAAT TCACTGGGGT AACATTGTTC ATGAAACGGG 001760 001761 ATAATGTGTT TCAGCGATGA ACCACCCATG GCCTTACTAC AGACATATTT CCACTTTGAA AATGTGTGTG AGTGTACATG 001840 001841 TCTGTGTGTG AGGCAGAGAT TAGAAAGTGT AAATGTGTGC GTTTTCATTT TACACATCTT ACATTTTCCT TTAATTTGTT 001920 001921 TGAAAGCCTG TTTTGTTTGT GGCTTCCATT CCTGGAAGTC CCATGAGTTG TTAGTGGTGA AGATGGAACA GATGTGTCCA 002000 002001 ACCCGGGGGA CTCCTGCCCT CAGGGACTGA GCAGCTGCAA ACCTCTCTCT CATCTGATTC CACTGTTTCT TCCACATGTA 002080 002081 CACATCATGA GAAATATTGT TCAATCAATA TCTTCCCTTA AATCAACTCA TATGCTTATT TACATGAATT TACCTAAAAC 002160 002161 AGAAACTTGA TATCACTTCT GTAAATGAAA AAATTAAACT TTCTGGCTTT AAATAAAGCA T |
Predicted Small Protein
Name | NONHSAT031821_smProtein_1763:2029 |
Length | 89 |
Molecular weight | 10209.1273 |
Aromaticity | 0.102272727273 |
Instability index | 57.6852272727 |
Isoelectric point | 6.48455810547 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0528427587251 |
Amino acid sequence | MCFSDEPPMALLQTYFHFENVCECTCLCVRQRLESVNVCVFILHILHFPLICLKACFVCG FHSWKSHELLVVKMEQMCPTRGTPALRD |
Secondary structure | LLLLLLLHHHHHHHHHHHHLLLLEEEEEEEEEEELLLEEEEHHHHHLLLHHHHHHEEEEL LLLLLLLEEEEEEHHHLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiiiiiiiiiiiiiiii |