NONHSAT033882

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT033882

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1531 nt

Genomic location

chr13-:51580964..51582574

Exon number

2

Exons

51580964..51581045,51581126..51582574

Genome context

Sequence
000001 caggagaaga aatactcaga aaggaccagg agagttgagg gtgagaagca ctcttgtgga tgactttagg aaggaagaat 000080
000081 tgaacaaaaa tgtcaaatgt agtaataagg actgaaaaat actcactaga ggttttgggg acattctcaa aagtggttgt 000160
000161 agtagaatgg tgggATAGAC GTTGGGCTGA AGAATAAAAA GAGGAGAAAG TTTGCATGAG ATTAAAGCAG GTGAGAGGCT 000240
000241 GTTTTGTTTG TTTCTGTTTA GGATGGAAGA GACATAAGCA CACTGAAAAG CAGAAGGAGA AAGGCAAATG GAATGGGAGA 000320
000321 TGAAGATAAG CGTGGGGTGG CCAATGGAGC AAGGCCCAGA GGTGGTGGGA AGGGGGTGAG GGTGAGGAGA CCCTGGACAA 000400
000401 GAAATATACC TCATCCTCGG AGATTGGGGG ACAGGATGGT GTGGTCATGG GGTGAGAAGT CACAGGCTCT CACCTGTAAT 000480
000481 CAATGTAATT TTGTAGATGA ATCAGGGCAT AAAGTAGGAG GCACAGCCAC CAGCGTATGA GTGAGGGGAG CAGATGCCAA 000560
000561 ATGGAGGCCC ATGAGGACTG TGGTGAAGGT CTGAACTCTC TACCAACCTG GCCAAGGGCA AGGGAAGGCT CGATGGAGTG 000640
000641 CCGAGGCAGG TGGTCATGAA TTTGAATCCT CATTGGTCTG AGTGGTTCTT TGGCTTTTCT CTAACATCAC TTGGTGGCTA 000720
000721 GTAAATAAAT AAACAGGGAA ACGTTTTGTA ATTACCCCAT AGCTCTGTCT CTTTTCATGG TCCCTTCCCT ATAGTCCTCC 000800
000801 TCTTCAGTTC CTTGGCAGAC AGAAATTGTG GTGGAGAAAG CTTGGGTAGT TAGGATGAGC ATAGTAGCAA GCATGGGGTA 000880
000881 TATGGTGCAC TTGGGGAAGA TGGAAAGAAG AGTGTTGATA CCCAAGAGTC TTACGTGGCA GAAACATGAA AGGTGGTGTC 000960
000961 CACATGGGCA CTGACAGCAT GGTGTGTAGA AACGTGAGAG ATGCCCATAT GAGGGTTGAG CTGGAGGGAG GAAAATTGGT 001040
001041 GGCAGGGTTG GGAGGGTTTT GATGGGTCCC TGTGTTCTCT TTTGGCCTTT GGCATCCTGT TCAGAATATC TCATCCTCAC 001120
001121 TTTCCCCACG GCCTCTGTCC TGCTTCAGCA GGCAGATGTC TGGGATCTTC CCTCCCCTGC TGTTGTGTGT CCTGTGTCCT 001200
001201 GGACTTTTCC TCTTGAGTAG CCCTTTGCAT TGTAGCCAAC TCTTGAGTTA CAGACCCACA ATCTTTGATA TCTGATGCAC 001280
001281 TTTTTTTCTC TGTGCAGAGC CTTGAAAAAT CAAGGGTTTA AAATCATTGA GAGGGGTGAA ATTGAAGTGA AAGGTAAAGG 001360
001361 GAGAATGACC ACATACTTTT TGATCCAGAA CTTGAATGCC ACAGAGGATG AGATCATGGG GAGATCTAAA ACCCCAGTTG 001440
001441 ATCACAAGGG GTCAACACAG AAAGCATCCT TGCCCACCAC CAAGCTCCAG GGCTCAGTTC AACCATCTTG CCCTGAACAC 001520
001521 TCTTCTCTTG C
[back to top]

Predicted Small Protein

Name NONHSAT033882_smProtein_1061:1219
Length 53
Molecular weight 5739.6974
Aromaticity 0.134615384615
Instability index 65.1576923077
Isoelectric point 3.69891357422
Runs 11
Runs residual 0.0611690569318
Runs probability 0.0546000546001
Amino acid sequence MGPCVLFWPLASCSEYLILTFPTASVLLQQADVWDLPSPAVVCPVSWTFPLE
Secondary structure LLLEEEEELLLLLLLEEEEELLLHHHHHHLLLLLLLLLLLEEEELLEEELLL
PRMN LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii