NONHSAT033882
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT033882 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1531 nt |
Genomic location |
chr13-:51580964..51582574 |
Exon number |
2 |
Exons |
51580964..51581045,51581126..51582574 |
Genome context |
|
Sequence |
000001 caggagaaga aatactcaga aaggaccagg agagttgagg gtgagaagca ctcttgtgga tgactttagg aaggaagaat 000080
000081 tgaacaaaaa tgtcaaatgt agtaataagg actgaaaaat actcactaga ggttttgggg acattctcaa aagtggttgt 000160 000161 agtagaatgg tgggATAGAC GTTGGGCTGA AGAATAAAAA GAGGAGAAAG TTTGCATGAG ATTAAAGCAG GTGAGAGGCT 000240 000241 GTTTTGTTTG TTTCTGTTTA GGATGGAAGA GACATAAGCA CACTGAAAAG CAGAAGGAGA AAGGCAAATG GAATGGGAGA 000320 000321 TGAAGATAAG CGTGGGGTGG CCAATGGAGC AAGGCCCAGA GGTGGTGGGA AGGGGGTGAG GGTGAGGAGA CCCTGGACAA 000400 000401 GAAATATACC TCATCCTCGG AGATTGGGGG ACAGGATGGT GTGGTCATGG GGTGAGAAGT CACAGGCTCT CACCTGTAAT 000480 000481 CAATGTAATT TTGTAGATGA ATCAGGGCAT AAAGTAGGAG GCACAGCCAC CAGCGTATGA GTGAGGGGAG CAGATGCCAA 000560 000561 ATGGAGGCCC ATGAGGACTG TGGTGAAGGT CTGAACTCTC TACCAACCTG GCCAAGGGCA AGGGAAGGCT CGATGGAGTG 000640 000641 CCGAGGCAGG TGGTCATGAA TTTGAATCCT CATTGGTCTG AGTGGTTCTT TGGCTTTTCT CTAACATCAC TTGGTGGCTA 000720 000721 GTAAATAAAT AAACAGGGAA ACGTTTTGTA ATTACCCCAT AGCTCTGTCT CTTTTCATGG TCCCTTCCCT ATAGTCCTCC 000800 000801 TCTTCAGTTC CTTGGCAGAC AGAAATTGTG GTGGAGAAAG CTTGGGTAGT TAGGATGAGC ATAGTAGCAA GCATGGGGTA 000880 000881 TATGGTGCAC TTGGGGAAGA TGGAAAGAAG AGTGTTGATA CCCAAGAGTC TTACGTGGCA GAAACATGAA AGGTGGTGTC 000960 000961 CACATGGGCA CTGACAGCAT GGTGTGTAGA AACGTGAGAG ATGCCCATAT GAGGGTTGAG CTGGAGGGAG GAAAATTGGT 001040 001041 GGCAGGGTTG GGAGGGTTTT GATGGGTCCC TGTGTTCTCT TTTGGCCTTT GGCATCCTGT TCAGAATATC TCATCCTCAC 001120 001121 TTTCCCCACG GCCTCTGTCC TGCTTCAGCA GGCAGATGTC TGGGATCTTC CCTCCCCTGC TGTTGTGTGT CCTGTGTCCT 001200 001201 GGACTTTTCC TCTTGAGTAG CCCTTTGCAT TGTAGCCAAC TCTTGAGTTA CAGACCCACA ATCTTTGATA TCTGATGCAC 001280 001281 TTTTTTTCTC TGTGCAGAGC CTTGAAAAAT CAAGGGTTTA AAATCATTGA GAGGGGTGAA ATTGAAGTGA AAGGTAAAGG 001360 001361 GAGAATGACC ACATACTTTT TGATCCAGAA CTTGAATGCC ACAGAGGATG AGATCATGGG GAGATCTAAA ACCCCAGTTG 001440 001441 ATCACAAGGG GTCAACACAG AAAGCATCCT TGCCCACCAC CAAGCTCCAG GGCTCAGTTC AACCATCTTG CCCTGAACAC 001520 001521 TCTTCTCTTG C |
Predicted Small Protein
Name | NONHSAT033882_smProtein_1061:1219 |
Length | 53 |
Molecular weight | 5739.6974 |
Aromaticity | 0.134615384615 |
Instability index | 65.1576923077 |
Isoelectric point | 3.69891357422 |
Runs | 11 |
Runs residual | 0.0611690569318 |
Runs probability | 0.0546000546001 |
Amino acid sequence | MGPCVLFWPLASCSEYLILTFPTASVLLQQADVWDLPSPAVVCPVSWTFPLE |
Secondary structure | LLLEEEEELLLLLLLEEEEELLLHHHHHHLLLLLLLLLLLEEEELLEEELLL |
PRMN | LLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiii |