NONHSAT034265
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT034265 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3781 nt |
Genomic location |
chr13+:72441332..72445112 |
Exon number |
1 |
Exons |
72441332..72445112 |
Genome context |
|
Sequence |
000001 GAGAGGGGAA TGACAGAGAG AAAATGAGCT GAAAAGTGCA GGCTGCCGGC TGGACGAGTT GTTGTTGTCA CACGGTGCAG 000080
000081 AGGGGAGGAG CTCCGGAAAC TTGAAATACC CTTTGAAGCC GCAAAAACCT CACTCACTAG TATTAACCCA AATTATCCAA 000160 000161 CCAGGAACTC GGAGCAGAGA CTCCGAGAGC GCGAGACACT ggagagggag cgtgcgagga aaggaggagg ggagggggag 000240 000241 gatacggaaa gaaactgtgg gagggacgga gaggaaaagc cggggacaca gaagtggcga tcggaaaagg agagggagaT 000320 000321 CATCTACTTC TCTTCTACTA CTACCGTTAG ATTGCATGTC TCACATTCCA TTTCGTCCGC GGGGACTGGT AATTTTTTCC 000400 000401 AAAGCTTCTA AACAATCGCC CGCCAACTTA AAGAGGAGCC TGAGCGCGCC GAGCTCTCTC CTTCCAGGAT TTAGGATCCA 000480 000481 TCTCCACGCG TTTTGGCAAT GAGCTAGAAA CGAAAACACA GCCCCCACTT CACGATTATT CAGAAATTAT TTTGAGGAAA 000560 000561 ATTCACATGT AAGCAAAGCG TAATGTTCTT TTGCATCTGA TTGTTTATTT CTCTACtaaa ttatttattt atataaaGAT 000640 000641 AGTGAAAATT CCAGGACAGT TTTCAAGTGG TGAGAAGAAA GTCAGTCCGA AATCGCTTAA GAATAATGGA AAGCTCTGTA 000720 000721 TTCAATTCCA TATTTCCTAA TAGGTTGTGG AAAGAAATGC TTGCCTTGAT GTGGATGATT TAGAATAACT TCACTGTCTC 000800 000801 CCCAAAAGCC AGTCAGAAAT ACCTGTTAAA CCTAGAGCTA TCAAGGAGAT AAGGTATCCT TGAAGATTTA GAAAGTGGAA 000880 000881 AAAGGGTTTT CTTACCCAAA ACTCTATAAT TAATTCACCT GTCTTACACA GTAACCAACT ATCCTCATGT CCTTTAAGAC 000960 000961 CCAAAGCCAA TTGCTAATGT GTTTTTTGGA CAACACAATA GTTTTTTTTT TTTTTTTTTC ATGTTTGAAA AGTGCTGCTG 001040 001041 TAGTTTTGGA AAGTCCTTTT CAATTTGTCA GTAAATATAT GTTTTGTAAA TAATGGGAAG AACAAAAACA AAGCTCACTA 001120 001121 GTTGACTTGT AAAGACTTGG GTAGCTGTGC TTAAAACAAC ATGAGGCTGA GTTTAGACTG ACTCTATTCC TCCTTTCCTT 001200 001201 CCtctttcct tttcttttct tttctAACTT GTTGCACTGA AGTATTTATT CAAGGATTTT TGACTAACAT ATCATTTGAA 001280 001281 TATGGGTCAA ATCTATTTGC TGCTCATGTC TCCAAGTATC TTCAATTAGT TAGCCTTTGA ACCGGTCCAC ACATGTTCAG 001360 001361 TAAGTTCATA AGATATGAAG CAATGCTTTA GCATTTGACA GATTTTTAAA ATAAACTGTT AGTAGCAGGT TCACAGGGTT 001440 001441 GGGaaatttt ataataaaat ttttGCCATT CTGGTGTTGA AATGATCACA TTTCTCTATA TCATTTTAAG CCTTTGAACT 001520 001521 CTGTGAATCG CAGTGTCAAA TAGTGCAGGA ACTGTCTACC GAAAAATAGA AATATGACAC TATGGACTAA TTAGTGTATG 001600 001601 ATTATACTAA AATTTTTGGG ACATAGCAGT TAAATCAGGA GGCTTTCCTG GGAGATAAGA ATTCAGAAAA TCGATTGTTG 001680 001681 CAGAAAAGTC CATGAACTTC TGCAAGGACA ACTAAAGTTT AAACAGTTGT TTGGCCTGGT TAACCAATGT ATTGTAATAC 001760 001761 ATTCAGAAAT AATTTTTATT TATGTTTCAG TCTTCAAATT TGTTATGGGT AAAAGTAGGA ATTCAATATA TATCACATAC 001840 001841 ATCAAAACAC TTCCTTAAGT ATTTTTGCAT GTTTTAGAAA ATATTACTTT TTTAAGACAT ACCAAACTAC TATTATAATG 001920 001921 AGGGGAGGGG AGGAAGAAAG TATTAAGCCC TGAAAAGCTA ATTTTATTTT CGAATTCTAT GCCTAACTTT AATAAATTTT 002000 002001 GATATGGTTT TAAAAGACTA AACTATAGTC TCATTATTTT AAGTTCTAGA CCCACAAATG GAAGAATGGG AATTAAATGC 002080 002081 CGAGCATCTG CCATTACCAT TCTCATTTTT TACATTTCCT TAAACTATCA CTCACCCAAT ACCTGACACA TTCGGAAGCT 002160 002161 ACAGACAGGA GGTAATGATA GCAGCCCAAG CCATAATCCC ACCTTGCTTC GAAGCAAACT CCAAATTTTC TACTGCAGGG 002240 002241 AAACCTTTGC CTCCGAGCAC GTGCTCCACT CAGAAGCAGG GCTGAGAGAC ATTTGCCCCC ACCTGAATAA GAGCTCTCCA 002320 002321 GCCTTCCTTC TCCTGACCTC AGGTCTCAAA ATCAGTTCAG GGAACCACCA CTTACCCCTT CAATCAAACA ATAGGATTAG 002400 002401 AAAAGGCATA TAGCACAAAT TAAAATATGT AGGAAATAAA AGCCTTGAAA ATTTTGAAGG ttttatctct tttttctttc 002480 002481 cttttttttt ctttttcttt ctttcttttt GAGAAATGTT GCCAATGAGT AAGGCAAACA GTTATTTAAC AACAACAGAT 002560 002561 AAATCAACTT AGAGATTTTG AATTCTCACT CCATTGCATC TTTAGCTTTT AGAGCTTTTG TCTTGCTTGT TTATTGTTTT 002640 002641 ACATCTCCGC TTGTTTCAGG TCCTCTCCAT CTCATCTTCC CCAACCTTCA CTCAATTTGC ATAAGCAAAA CTCAAAGTAC 002720 002721 TGTAACTGAT ATTAGAAAAT TCTCCCTGTG TTTTGTGAAG ACGTATTGTG CTGAAATCAA TAAGACTGTT TAAAATTCAA 002800 002801 AGACCTGCAA ATCGTTCTGT TTGTCCTTTG ATAGGGCCTG TGCTGATTAA AATGCTACCA AGAAAGCTTA ATTGCTGCAC 002880 002881 TAATTAAGAA GTCTTTAATT TCTTTCCTAG GATATCGTTT GAAGCTTAGC TTGTACCAGT TCAGGGAAGG TATTTTCTTc 002960 002961 cctccctctg cccccttctg gcccctcccc tccctttttc ccgtcctccc ttcccccaca acccccccca ccccccgccc 003040 003041 GACAATGAGA TCCCTACGAA TGGGAACTAA CAGAGAGAGT GGTCTCAGGT CTTGCTATCT GTTACTTAAC AAAAATCGGC 003120 003121 ACAGGATGCA GAGTTCAGTA CAGTATGAAA TGCAGTTTTG AGAAGAGCTG TAAGGTTGCA AGAGACAGTA AGAAAATACA 003200 003201 AAGTAGCTGT TGCAGCTAAA GTCCCGCTGA ATACCTGGAT GACAACAGGC ACTTTAGCCC GATGATGAGG GCATCCTATT 003280 003281 TGGTTAAAAG GGGCAGTGAC AGGGAAATGA AACAGGGACA CATAAAAACA TACTTACAAA ACCTGTGGTT TAAAAAAGAA 003360 003361 TAAATCTGTA GAAAGATGGA CATAGAGTTG GGATTTGGTA AGTATCATTT TATTTTATGA GTATGAAAAC ATGAATTCTA 003440 003441 TGGGGATTTA TTTCTGACCC TTTTTATAAC CCAGGGAAAC ACAGCACTGT ATTACATCCA TTCCATTCTT ATCTATTGAC 003520 003521 CTATTTTATT CACTGATTTC TCAAGTGGGG AAACTGACTA AATCATTTCA CAAAGCTTTC TCTGTAATCA ATAGTCATTT 003600 003601 TTTAGGTTTA TTCATGCTGC ATTATAATTC TGGTAAATGA CTGCAAAGCA GAAGATTGTA AGAAAGATAC AAATATTGAC 003680 003681 AAAGCCAGGA TAAGTCATGT CTTTAAACCT TCAGAGTTTC AATATAATTG ATATCATTAT TTGAAAAAAG GGAAATGCAT 003760 003761 ATTTCATAGC ATATAAAAAA C |
Predicted Small Protein
Name | NONHSAT034265_smProtein_3044:3160 |
Length | 39 |
Molecular weight | 4622.3236 |
Aromaticity | 0.0789473684211 |
Instability index | 66.4842105263 |
Isoelectric point | 10.8430786133 |
Runs | 7 |
Runs residual | 0.0115997229917 |
Runs probability | 0.0233679057208 |
Amino acid sequence | MRSLRMGTNRESGLRSCYLLLNKNRHRMQSSVQYEMQF |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHLLLLHHHLLEEEEEEL |
PRMN | - |
PiMo | - |