NONHSAT035177

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT035177

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1578 nt

Genomic location

chr13+:111474475..111491682

Exon number

4

Exons

111474475..111474894,111477210..111477338,111490563..111491472,111491564..111491682

Genome context

Sequence
000001 TCAACGCTAT GGAAGCTTTG CTCTTTTGCT CTTTGCAATA AATCTTGCTA CTGTTCACTC TTTGGGTCCA TGCTGCTTTT 000080
000081 ATGAGCTGTA ACACTCACAG GGAAAATCTG CAGCTTCACT CCCGAACCGA GCGAGACCAC GAGCCCACCG GGAGGAAAGA 000160
000161 ACAACTCCAG ACATGCTGCC TTAAGAGCTG TAACACTCAC CGCGAAGGTC TGCCGTTTCA CTCCTGAGCC AGTGAGACCA 000240
000241 CGAACCCACC AGAAGAAAGA AACTCTGAAC ACATCTGAAC ATCAGAAGGA ACAGACTCCA GACGCGCCAC CTTAAGAGCT 000320
000321 GTAACACTCA CCGCGAGGGT CCGCGGCTTC ATTCTTGAAG TCAGTGAGAC CAAGAACCCA CCAATTCCGG ACACAGAATT 000400
000401 TCATGGAGCC TGGAGCCCAG GAAAAGGGTG AATCCAATGC AGGCTGATTT CTGGCTTACA TCACAGTCCA GTCTGATTTT 000480
000481 CTGCAGATTA CTTTCTACAA GACGATTTGG GACCTCAGTT TACCACCTCC CAGCGGACCG ACGGGTGCGT TTGCAATAGT 000560
000561 TTCAAAGTAA CCCCTTCCAC AGACACAAAT TGTTCATTAG TTATAAATAG AACAACAGTA ACTTTACAGT GGAAAAAGCT 000640
000641 GGCGGACATC ATTTTAGCCA CATAATCAAA GTTAACGTCA ACAGTAAGGA GAAAATCAAC ACCACGTGTC TTCTGACAAC 000720
000721 AACGCGCTGA TGGGAGCCCA ACATCATTTA CACCATAAAT CAAATGTTTA TCCGTTGGCG ATTCCAGCCA AAAATAGATA 000800
000801 ACCTGATCCA ATCATGAGGG AACTTCAGAC AAACCCAAAC TGAAGGACAT TCTACAGAAT AACTGGTCTG TACTCATAAC 000880
000881 AAAGAATCAA TGTCATGAGG GACCATGAAA GGCTGAGGAT GTCCCACAGG TTGAAAGTGA CGAAAACAAA CAAAAAACAA 000960
000961 CCAGCAACCA ACTACGATGC ACAACCTTGG ATTGGAGCCT TCTCAAAATT GCTGAAAATA ACAGTGGAAC AAGTGGTGAA 001040
001041 ATTTGAATAT GGGCTATATG TTAGGTATTC ATTTTATGTC AATGTTAAAT TTTCCGACAT TGATATTTGT ACCAGGAAAT 001120
001121 GTAAAAGAAG GCCCAAATTT AGCGATAAAT TATGCCTGCC ACTCACTCTC TCCAATGATT CAGAAGATAG TACGGATGAT 001200
001201 GAACAGATGA CAGAGACATG GTAGGTAGAT CAATAGATGG ATGGATAGAT AGAAAATATG AAATAAGAAA CTCCTGGACA 001280
001281 CGAACCGTAC AGACCAAGTT CATCACTCCT GTGAGGGAGA ACCTTGAATT CCCATAAGAA AAACTGAATG TGCAGGAAGC 001360
001361 GTATCTCATT CAGTTCACAA ACCATGATGG GTTCTGTGTT CACCCTGGCT AACTATCTAC TTCTACCTCT CCTCTCCTCC 001440
001441 TCTCCTCTCC TCTCCTCTCC TCTCCTCCCC TCCCCTTTCC TCTCTTCCCC TCCCTTCCCC ACCCCTCCCC TTTCTTTCCC 001520
001521 TCCCCGCCCC TCCCCTTTCC TCCCCTCCCC TCCCCTATCT TGAAATTGGA ATTCAGAA
[back to top]

Predicted Small Protein

Name NONHSAT035177_smProtein_80:226
Length 49
Molecular weight 5647.2288
Aromaticity 0.0208333333333
Instability index 67.125
Isoelectric point 7.76300048828
Runs 6
Runs residual 0.0405701754386
Runs probability 0.0348878290056
Amino acid sequence MSCNTHRENLQLHSRTERDHEPTGRKEQLQTCCLKSCNTHREGLPFHS
Secondary structure LLLLLHHHLLLLLLLLLLLLLLLLLHHHHHHEEELLLLLLLLLLLLLL
PRMN -
PiMo -