NONHSAT038177

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT038177

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7775 nt

Genomic location

chr14+:88490907..88498681

Exon number

1

Exons

88490907..88498681

Genome context

Sequence
000001 ttgaaggcag tatgcttggt aaaagtcatc gccattctct aatcttgagt acccagggac acgatacact gcggaaggct 000080
000081 gcagggacct ctgcccagga aagccaggta ttgtccaagg tttctcccca tgtgatagcc tgagatatgg ccttgtggga 000160
000161 agggaaagac ctgaccgtcc cccagccaga cacccgtaaa gggtctgtgc tgaggaggat tagtgaaaga ggaaggcctc 000240
000241 tttgcagttg agataagagg aaggcatctg tctcctgctt atccctggga atgaaatgtc tcaatgtcaa acccgattat 000320
000321 acgttctatt tactgagata ggaggaaacc gccttatggc tggaggtgag atatgctggc ggcaatactg ctctttaatg 000400
000401 caccgagatg tttgtgtaca tgcacatcaa ggcacagcac ctttccttaa acttatttat gacacagaga cctttgctca 000480
000481 catgttttcc tgctgaccct ctccccactg ttaccctatt gtcctgccac atccccctct ccgagatggt agagatagtg 000560
000561 atcaattaat actgaggaaa ctcaagagac cagggctggc gcccgtcctc cgtatgctga gtgccggtcc cctgggccca 000640
000641 ctgttctttc tccatacttt atctctgtgt cttatttctt ttctcagtct cttgtcccac ctgacgaaaa acacccacag 000720
000721 gtgtggaggg gctggtcccc ttcaGTTCTA AAGCCCACTT GGCTCATTCC ACATGTGGCA GTATTTTTTT ACCATGTGAA 000800
000801 CACCAAAATG AATTCGTGGC AAATGCACCT CCCGTTTATT GCAGGCTTGC ATGAAGGAAA TGATTTCCTA TGATTCTGCT 000880
000881 TACTGCTTAA AAAAATTAAT CAAGTTTTCT GCCTGACAAG TAAGTAACTG TGTTTATTTT CTGTTCATGA CTAGGCAAAA 000960
000961 GCACATAACA TCCCTATGTG TCCAGTGAGT TATGAAAGTT CTTTAAAAGC AGTGCATTAG CCATGGATCT TCCTGCTATC 001040
001041 TCTCCCCTGC AGTTTGCTGA GAATGTTTTC CATAATAGAA CCAGGCTTAT CACAATTTAT TCCTGCCTTA CTGACTACTA 001120
001121 GGTCATTGCC TAGAGTTCTG AACCCCGGGT TGGAAGCTGT TAAAATTTAA TAAAAACTAC TTTAGAGAAA ATGGTCACTC 001200
001201 TCCCTTCATC CTCTCTCACC TCCCTCTGGC TCCTTGACCC CCATCCCTCC CTGAAGATGC TGGTCGCTAA GGCTCTTTTA 001280
001281 ATAGACTTCC TTATTGTCCC AGGTTTCTGG GAATTCATCA GTGATAGCTG CCATGGGTAT GTTGAGAGGA TACTAtatgc 001360
001361 tgagaactcc acatctgata ttttacttaa tttccccaca atattatgaa gtagatgtta ttttccccat tgtacaataa 001440
001441 gagatggaaa gctagagagg ctaaAAGCAG AACAAGAATT TGAACCCAAA TGCCTGTGAC TGTAACCACC ATACATATAG 001520
001521 CCTACCTGTT TCCATGTTGT TCTAGCAGGA TCCTTGTTTT CTTCCTTCTT ACAGTAAAAT CTGACTGATC ACTGTTGAGT 001600
001601 AACGGATCTT AATTAGGTCG AGATGCGGAA GGAGTTTGCT CCTGTAATTT CAGGAGGTCT TTGCATATAC CTATTATTGC 001680
001681 AAATAGATTT CGCTTTATTG GAAAAAGGCT ATCAGTATTC CCTGGGGACT CTATTTTTAC AGCTGAGACT GCTGCTCTCT 001760
001761 ATCAGTCACT ATGAAGTAGA AATTCTGATT ATGATATCAC ATAAGATTCA AGGCCACTAG TGATAAATGT TCAAGAGGAG 001840
001841 GTGTGTTCAG CTTTGTGATA CACTATTGTG ATAAAAATAT GGCACAGGAT TTTAAAAATA TGAAAATGTA AAAGGAATAC 001920
001921 AAATATGATA AATGATTATA AGTCTATGTA TGGAATTTAA TCTATTTTTC CTAAATGCTG ACTGTAAGCG GTTTAGCCCA 002000
002001 GTGATATAAA CTGTGCCTGA GAAAGGTCCC AGTCAATTTC ATGCTGTTCA TGTGCCATTT ATTTTTACTT TTTAAGTACA 002080
002081 TTGGGAAAAT ACATAAGAAA AAATGTACAT TCATCTTTTT AATGATACTA TAAAAGATGG TGAACAAGTT AATCGGAAGA 002160
002161 AAAGAAAAAC AATTCATCTA GACATTCTTG CAATGAATTT TTGCCAAATG CTTAATTTTT ACTAGATGCT AGGAGAATTG 002240
002241 GGAAGCCTTA AGTCTGACAC AGGATCCAGA GACAAAAATT ACAAAGTAGT GAGTGCTATG GTAAGAGTTA AGTAAGAAGG 002320
002321 TTGGATAAGA TGTCCACTAC TAGCTCAATC TTGAAAGCGT CCAGGACACT TGCCTctgag acctaaacga ctgagtgggc 002400
002401 attgatcaag agtgggaggt tgtttcaggg tcagcacatg caaaggacag gctccatttt aggaaaatga aagtagttca 002480
002481 gtgttattga agctgatggt gagggaggaa gtggcagaag ataaaggctg gaaagaaaca agtcaataag aagccacaaa 002560
002561 aaagttgtaa gtagatgaat gacatgatcc aatttgtgct ttaggaagat tacttttgtc tcagtgtcca atataggtgg 002640
002641 agggaggcaa aatgagaagc agagagttat ttgatggtgg aaagagagag ctgttcaaac aaacaggcaa gattcagtgg 002720
002721 agacctgaac taggcaggtg gcatcttggg ttgcaagaaa tggacaggta caaaagatat ttagaaggAC Aagaaggtat 002800
002801 tttagttgga tgacgtacat ttcaaaggaa caaggaagaa gaatggtctg ggaatagtat tggtgagcca ggagtcttca 002880
002881 tttgagtggg ctgcagggaa agttgtgtcc tcagaagatg ccacatttca gttatggtac aatgggaggg aacattcaCT 002960
002961 GTGGCAGTGG AATCACCAGA GGGCCACAAG TGGATCAGAT TGGGAAGTGG GATAATATTC CAGCCTGAAT TAGATTGTAC 003040
003041 Aatcccaggg agcaggaatg aggaaggaaa gggagtagaa tagagaaaaa gggggagtaa tatgaggatg cattataggt 003120
003121 ctaactgctt ccaggtatga ctgattgctc aatcccatag gaccatcttc taagaagttg taataattta atcacagaga 003200
003201 aaagtgaaga atttagccac tggctgcagc ctccaattgg tcaaaggttt gtctcacaga gcatgaacct ccctgcacct 003280
003281 ccatataaca catatttgag tgcaacaggg ttcttatata agtatcatca gggtggcccc agggaaggag gtgagaagtt 003360
003361 gcaataatgt caggttgcgc ttgcatgcaa gtgatcagaa tataccctaa gagcaagtta tctcagtggc agcttgaatg 003440
003441 aaatcggtga gccaaagcat ataaattagc acataaaagg tgcataatac aGTCCACCTT CTGCACTATT CAGGGCCACT 003520
003521 TTCCCCCATC ATTATATCCA AATTGCATAC TACAATATAG GCCCCCATTT TTGTGAGAAT AAGTTGTCCT TATCTATTCT 003600
003601 ACAAGAGAGG AAGCACTCGT CCAATCTGTC ACAAGGTCCC CTTCAAGGGA ATGGTCCACC AGAGTCTGAT TGAGGATAag 003680
003681 taagacaaac ttctgttcca tagctgaacc tggatctgaa gtcataagtt atatttatct ccaacctctt ccagcaattc 003760
003761 tatatttccc tcactatggg ccagcacatt agctatctgt gttggtctcc cggtgggatg acacaaacat tcatcgttga 003840
003841 gaggcttgaa cctttatttg ccttatcctt tttgggccat agttgttgca atacaattac gcatcagctt ttgacaatac 003920
003921 aattatgtaa gtacaataca aactatgtac aaatctgtta tcgctggaca caggagcacc aagagatacc cttgtgaaac 004000
004001 ccttgggttc cagatgtgtt tcttcttgtc ctcactggta acagcaactc tagctattca gcagagtcag gggctattac 004080
004081 ttttaatgat gtgctaacta tttattccct gctggcccat aagcatgagg agttcaactg atattttcag cttcaaattc 004160
004161 aggggaccct tacattttat ctggcagaat tattctcttt cccatccaca gtcacaatta agatttctaa tccaatagag 004240
004241 gctaaagttg caagatggaa gatagtaaac acaaattccg taatcacttg gttcccagtt ttatataatt gagctactgg 004320
004321 ggattcaaaa ccatatattg gtcattggct taatgtatat gccatatcct ggaagatcac attcaaccct gctagatgtt 004400
004401 gtccccaagc tgggatctta atgaaccttt aatatgattt ctaccattct cttaggatgg ctgcttctgg gtgatgggga 004480
004481 acaaggaaca attattagat tctgtttcat gcactcatta ccttgattct tataaaacag ttcccttggt gtgtggcaat 004560
004561 gctgtgtgaa atatgtgttg ataagtcaag cattctaaaa acttttggat ggtaagccag tggaggtact acagacaagg 004640
004641 agggcaaacc cagggtctat tcacattaag gatcaattcc tacaaggaca aatttctgtc ctccccaacc cccagggtag 004720
004721 aagatgtcta attgtaatct acctgatacc aagagactgg ctgatctcct caatctctgc tgttgacaaa ttgagcattc 004800
004801 aagactacca ttagctagac tagaaggaat tcatgcaaac ctttatctct gccatgagac cacccttttc ttgggctcac 004880
004881 tgtccagcat agaagcagtc aatgagagag agatgaagtg acatacatga tgaggtagcc ttccccactg gttgctgaga 004960
004961 gaactgttgg tggtagatgt tctctggtag gtagtaatag ctgcaaaatt tgtgtccatt tttataggtc aatctatatg 005040
005041 cctcatcctg tgacatcatc attccccagt tttctatttg attccttcca gactcctcac cagttattca tgtcaagtgg 005120
005121 atgacaaatt tactgctcac cactttcccg ctggctaatt tactttaacc gctgctcttt agagatacca ctgagtggat 005200
005201 ctataatatg tcagcagtgt atttttgact agcatctgtt gacacacttg tgagccaggc atgaagtttt ttttcaatct 005280
005281 tctatcagtt ggtcataggg aatcccctat aagccataag tgcaagatga gataaaaggt atcagagtga tagaaacaga 005360
005361 tgacatgcaa atttgtgcca cctctttgtg caatttactc ttgccttttg gacctgcctc agtcccattt ccaggcacga 005440
005441 cattccataa tgtagattgc tgctgtggct aacccaatct atgatttagt ggatttaatc atacacagtt ggctgtagtt 005520
005521 cagatatttg ctcctttcaa atctcatctt gaaatttgat ttccaatgtt ggaggtgggc cctagtggga ggtgtttggc 005600
005601 ccacgaggag tggatcccac atgaatagct tggtaccact ctcattagtg agtgagttct tgctctttta gtttcaatga 005680
005681 cagctgcttt ttaaagagtc tggcacctct acttctctct ctctctcctt ctctctctct ctctcttact tcctctcttg 005760
005761 ccatgtgatc tctgcacata ctggctcccc ttagccttcc accatgagtg gaagtagcct gggcccctct gcagaaacag 005840
005841 aagctagcac catgtttctt gtacagtttg cagaacagtg agacaaataa atttctttcc tttataaatt actcagcctc 005920
005921 agctattcct ttatagcaat actaaatgga ctcagaaaca gctcacactt ggtgtcttgt gatgttataa ttaggcattc 006000
006001 aatctctaca aatatccggt agcaggccag gagctgcaaa agaaATTGCA GTCTGCAAAA GCCAGATAAC TCTTTGTCAA 006080
006081 CTTTGAAGGA GATTCTCATT TCCTACAATT CCTTCATCAT GGAGAGCTCT ATcacgatta catctattga gttttatagt 006160
006161 tcaatagtct ggctctgcag aaggctcctg cagagccttc tgttaactat ggcccaggaa aaacttccat atctcccaga 006240
006241 atatagacca aagcagtatt tttaaatgca gtctattctt ccaccaaaat tcaaaaaggc tcaccaagca gtgtacctct 006320
006321 ttcttagtgg taggagttgc aagtagaaca atgtgtttat ttctttgtaa gaatgtccta gcatattctg gattgctgga 006400
006401 tatctactaa gttgaccaat atcatgggaa cctgaacttc attgggttta tcacctaccc tctgatatgc atgtatctta 006480
006481 ctgggtcacc tagggtatta acatttccaa taaccatgac atcatcaata cagtagacaa gtgttatacc atgacgttct 006560
006561 gcagaaggct aagatgatgg aaatacctag ctattatgtt gtgacaggga acaggatagt taacacaaga gtgagtatgt 006640
006641 agagttgccc ctctaaatgt aaagtcaaat tccttttgat catttttgct gatggaaatC TAgtcaacaa acattttctg 006720
006721 taaagggtca tacaataaat atttttagcc acgtggttct gttataatta ttcaactctg cttttgtagT CTGTggtcat 006800
006801 atttggccca tgagctgtag tttgcctacc cctgACTTAA AAACAAAGTG TTTTCCAGAT TAGTAGCTGC ATATAAAACG 006880
006881 CCAAAGACCA TGTTGATCTT TTTCATGAAA GGTACCACAT TTTGtctcca atgacccata tgtttttttc aggatacaca 006960
006961 taaaccaact gaatagggat atgatgagac caccacacct tcatccttta aatctttaat gTGTAATAAA GATTTACACA 007040
007041 TTAAAAGAAT TACACATTGT GTAATTCCTT TTAGGATGCA GATTGCTTCT TATTTACCAT ATAGGGCATG GATGTGTACA 007120
007121 TAGGGGTGTG TGTGTGTGTG CACGCATTTG TGTATATGTA GGAGGAGAAG GAATTGCAGA aatttcaggg gtttccacag 007200
007201 agcccttgct accatgatgg cccttaatct acaagtcgga gaaacaatgg gagggttctg ccagatgctt aaaataactg 007280
007281 tgtatttgga gactagaaaa ataactgaga atttttgtcc ttgcgattga acaatgagaa cacatgggca caggaagtgg 007360
007361 aacatcacac accggggaca gttgtggggt ggggggaggg gggagggata gcattaggag atatacctaa tgataaatga 007440
007441 tgagttaatg ggtgcagcac accaacatgg cacatgtata catatgtaac aaacctgcac gttgtgcaca tgtaccctaa 007520
007521 aacttaaagt ataataataa aaaaaaagaa aaataactga gataaacttg agctaacatt tcatttatca cctagcttcc 007600
007601 atatacccac tctaactgga attccatgat gaagacttga gtccactagc atcggaaaac tcggatccca tatttaacag 007680
007681 tgctcaaaaa caaatatacg tactgccttc cccagtgtac aatagtctat caatggccac aggtcccttt tgggaaggat 007760
007761 tacaaggaat atttc
[back to top]

Predicted Small Protein

Name NONHSAT038177_smProtein_1190:1408
Length 73
Molecular weight 8094.4169
Aromaticity 0.111111111111
Instability index 51.4694444444
Isoelectric point 4.63385009766
Runs 14
Runs residual 0.0535279805353
Runs probability 0.0743432508139
Amino acid sequence MVTLPSSSLTSLWLLDPHPSLKMLVAKALLIDFLIVPGFWEFISDSCHGYVERILYAENS
TSDILLNFPTIL
Secondary structure LEELLLLLLLHHHLLLLLLLHHHHHHHHHHHLLLLLLLHHHHHLLLLLLHHHEEEEEELL
LHHHHHLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooo
oooooooooooo