NONHSAT039672
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039672 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2742 nt |
Genomic location |
chr14+:100742066..100744807 |
Exon number |
1 |
Exons |
100742066..100744807 |
Genome context |
|
Sequence |
000001 CCTGTGAGCT GTCTAGTGAC TTGTGCTGTC CTTCTGTCAT GCTGTCTTAT CATTTCCCCA TTCACTCCAT TACTGGGCAA 000080
000081 CAACTGCAGA AGAAATTGTT GAGGACATGC TTCTCGAGCG CCACACATCC ATCTGCCTTT CCCGCCCTGC ACTGGTATCA 000160 000161 ATTTGCCTGC TTCTTCCTTT TCCTAGTGTC TCACAAAATA AATTTCTTCT GTAGTTGCCA TTCCTTGGAG ACCCTCTTGC 000240 000241 TTCTTTCTCT GTCAAGAAGG GGAAAGAGGC AAAGAGAGAA GAGGGAACAG TAGGCGATGG AGAATGACAG TCCATTGTTG 000320 000321 CAGCACAGAA TATGGGGCCA CCAAAGGTAG TGGTGGACTA CCGTCATTTT AACTCCATTT GCTTAGCAGT GCTTCTGTTA 000400 000401 CTTCATTTTG GGGGACATAG TCGGGTGAGG TGGCTGTGGT Agagctggaa gccagggtgt tgggttctat tcccagtttg 000480 000481 gctactacta gtagtgtgac cttgggcaag tctacttaaa gacatctcta agcctcagtt tcctcatctg taaaactagg 000560 000561 gtttgcattg aatgatgact ttttcagctG TCTGCTTTTT GTCTTAAATG ATATTAATGT TCTACCGTAA TACTAAGTAA 000640 000641 AATTAAAATG GGGGGTTGGG GAGGTGGTTT TGTTTTAATA TGTCAGTAAA GGCTGTTAAA TGGTTGAATC CTTTCTAACA 000720 000721 GTTTGCAATG TGAACTTCTA AGCTGCTTTC TCTGTTTTAA GGGCTGCACA AAGATGTTCA GGGATAACTC GGCCATGAGA 000800 000801 AAACATCTGC ACACCCACGG TCCCAGAGTC CACGTCTGTG CAGAATGTGG CAAAGCTTTT GTTGAGAGTT CAAAACTAAA 000880 000881 ACGACACCAA CTGGTTCATA CTGGAGAGAA GCCCTTTCAG GTAGAGCCAG TTCCCTCTCT TCCCCACACT GCCTTGCCTG 000960 000961 TCTGAACACT GCAAGTGTAG GTGGTGTGGT GATGAGGCAG GAGGCGCCAG CCCAGAGACT CAGGGTCTTA TTACTCCTTG 001040 001041 GTGAGAAACA AAACTTCTCC TGGGGAGTCG CTTAGAAGGG TTGCCGGGGC TCTGGACATC CTTGTCTATA CTCTGTGGTA 001120 001121 CTGGGTACGC AATGTATTGG TGTTGATGGA GTACACTTTA TGGCAGGAGG AGAACAGGAT TGAAGAGCAT ACCTAAAACT 001200 001201 CAATTTCTAC TTCATTCATT ACAGGATTGA AGTAATTTAT TTTTGGTAGT TAATAGTATA ATTACTAACT GATAAAGTTT 001280 001281 CTAGAGTGTA AGTATAGGTA ATACTTTAGC CCATAAATAA GTGAAAGAAC TAGCAGTGCA GCTAGTAAAT CTAACGTGGT 001360 001361 TCTTTTTTGA CAACTGACAC CAGAACCCTT AATCATTTGT ATTTTACTGT TGGAAATGTT TACAGCAGCA CTAGGACTCT 001440 001441 AGCCTGCATT TAGGAAGACT TGCCATTTTG CCAAGTGTTT TAAACAGTTC GTGAGGGCTC TCCTTGGGTT TTCGGGGTTG 001520 001521 TCCAACCTGC CTGCTGATTC TAGACTATAT CCACAAAGTT CACCCAGGGC AGGAATGAAA AGTGTTTGGT AAAATAAATA 001600 001601 GGCTGTTCTC TAGCAAAGCA GTGAGCTCCT GACTCCCAGG GTCTGGTCAG AGTTGCTGAG TGGGTTGATC TCTGGTCTTT 001680 001681 CCTTGACAGT GCACGTTCGA AGGCTGTGGG AAACGCTTTT CACTGGACTT CAATTTGCGC ACACATGTGC GAATCCATAC 001760 001761 CGGAGACAGG CCCTATGTGT GCCCCTTCGA TGGTTGTAAT AAGAAGTTTG CTCAGTCAAC TAACCTGAAA TCTCACATCT 001840 001841 TAACACATGC TAAGGCCAAA AACAACCAGT GAAAAGAAGA GAGAAGACCC TTCTCGACCA CGGGAAGCAT CTTCCAGAAG 001920 001921 TGTGATTGGG AATAAATATG CCTCTCCTTT GTATATTATT TCTAGGAAGA ATTTTAAAAA TGAATCCTAC ACACCTAAGG 002000 002001 GACATGTTTT GATAAAGTAG TAAAAATTAA AAAAAAAAAA CTTTACTAAG ATGACATTGC TAAGATGCTC TATCTTGCTC 002080 002081 TGTAATCTCG TTTCAAAAAC ACAGTGTTTT TGTAAAGTGT GGTCCCAACA GGAGGACAAT TCATGAACTT CGCATCAAAA 002160 002161 GACAATTCTT TATACAACAG TGCTAAAAAT GGGACTTCTT TTCACATTCT TATAAATATG AAGCTCACCT GTTGCTTACA 002240 002241 ATTTTTTTAA TTTTGTATTT TCCAAGTGTG CATATTGTAC ACTTTTTTGG GGATATGCTT AGTAATGCTA CGTGTGATTT 002320 002321 TTCTGGAGGT TGATAACTTT GCTTGCAGTA GATTTTCTTT AAAAGAATGG GCAGTTACAT GCATACTTCA AAAGTATTTT 002400 002401 CCTGTAAAAA AAAAAAAGTT ATATAGGTTT TGTTTGCTAT CTTAATTTTG GTTGTATTCT TTGATGTTAA CACATTTTGT 002480 002481 ATAATTGTAT CGTATAGCTG TATTGAATCA TGTAGTATCA AATATTAGAT GTGATTTAAT AGTGTTAATC AATTTAAACC 002560 002561 CATTTTAGTC ACTTTTTTTT TCCAAAAAAA TACTGCCAGA TGCTGATGTT CAGTGTAATT TCTTTGCCTG TTCAGTTACA 002640 002641 GAAAGTGGTG CTCAGTTGTA GAATGTATTG TACCTTTTAA CACCTGATGT GTACATCCCA TGTAACAGAA AGGGCAACAA 002720 002721 TAAAATAGCA ATCCTAAAGC AA |
Predicted Small Protein
Name | NONHSAT039672_smProtein_38:292 |
Length | 85 |
Molecular weight | 9944.5357 |
Aromaticity | 0.142857142857 |
Instability index | 60.3607142857 |
Isoelectric point | 9.96075439453 |
Runs | 11 |
Runs residual | 0.0030330603579 |
Runs probability | 0.0669653610829 |
Amino acid sequence | MLSYHFPIHSITGQQLQKKLLRTCFSSATHPSAFPALHWYQFACFFLFLVSHKINFFCSC HSLETLLLLSLSRRGKRQREKREQ |
Secondary structure | LLLEELLLLLLLHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLL LHHHHHHHHHHHHHLHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiiiiiiiiiiiiiiii |