NONHSAT040243
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040243 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1700 nt |
Genomic location |
chr14+:104580072..104581908 |
Exon number |
2 |
Exons |
104580072..104581355,104581493..104581908 |
Genome context |
|
Sequence |
000001 CTGGCATCCT TGCTGTCCTC ACCCCGACAC AGGTGTGCCT GGGCCTTGCA CAACAAGGTG ACGCCATGCG AGCGTGGCAG 000080
000081 GGCCGGGGAA GCCTTTGCTC CTCACCCTGG TGAGGCCCAT GAGGGGCTGC AGGTGGAGGG AGGGTGGCAC CGGGCCCCAG 000160 000161 AGCCAGGAGC CCCTGCTGTC CCCGGATGGC CGAGACCCTT GGAGGGCCTT GGGAGAGGCG GTGGGGCATC TGGACAAATG 000240 000241 CCTGGTGCAG GTGAGAAGGG GTGGGACTAC CTCCGGCATC CCTGGGCTGA GCCCACCTGG TCTCCCCGGT TGCTCCTGCA 000320 000321 CACGGCAGTG CCCACCTGCT TCCCTCAGCT CCTGAGGGGC TGGGCAGAGC CTGTTGCTCA CGCCACCCCA CTCAGTGCTG 000400 000401 CTCCGGGTTG TGAAAGCTGC AGGTGGCTCA CGTTAGCCCA CATGGCAGCA CCCTCCCAGA GCAGGTGCCA ACCTGCCAGT 000480 000481 GTAGACACAC CGACTGATGC CGGGGGTGAG TGTCCTGTAG TGTAGAAACG CCCACTCATC CTGCTTGTCC CGCAGAGAGC 000560 000561 ATTTGTCAAG CTGGCCTTTC TCCAACTGGG TCACTGATGG AGTTCGGCAG AGACGGCTTG GGGGCCACGG GCTGGGCAGA 000640 000641 TGGGGAGAGC TCCTCACAAG GCTGGGCAGC CAGACCCCCA TTGTCAGTCC CCTCCAAACC CTCGTGGGAT GTAGGGCCCT 000720 000721 ACCACAGGGA GCCCCGGGAC TGGGCCAGTG TCTCAGGAGG CTGTGAAGAG TCATAGGCTT GAGTCTGGGA GCTTTCTCGG 000800 000801 GGGCCGTTTT GTGCCCCTTG GGGAGAGGCC AGAGGGGCCC TGGGTAAGGG GACTCCTCTA GAATCACCCA GAAGTGGCAG 000880 000881 GAGGTGCAGG GCCACTGCTC GGGGCTCCCT GGGCTCTGAG CTGGGCAGTG ACCTGGCCCC AAGGCCTCTG GCTCTCTGGC 000960 000961 GTGCAGTGGG AACAGCCGGG ACAGACAGGC TTGGAGCGTT CGTGTCCTGC GCCGCGTTGG TGTGTTTCGT CCCCACTGTG 001040 001041 CCTGTAGGAG GGCACCGGGT CCCCGTCTAT cctacttcat ggctgaggaa gctaaggcac agagtggccc cgtcctgcgc 001120 001121 ccagggctct gcgttggcac agggcagagc tgggctgtga atcagggccg cctTGTCTCT TGCTGTGGTG TGAGGCTGTG 001200 001201 GGAGACTCAG GAATGAGGCA CAGCCAGGTG CCCAGTGCCC GTGGGACCCG CCTCCCCACA GTGGGGTGGC GCCGCTCACA 001280 001281 CCTGACTCCT CAGCTGAGGG CCCTCCAGGA CCGCCCTTCC CCAGCTGGAG GTAACCAGAT TTCTCGTGTA TGCTAGGAAG 001360 001361 TTCCCCTTCT GGTCACACCT CAATATTTCC TGCTGCTGGT GGGAACTGCA GGTGCTTGTA CTTGTCACCT TCTCCCCGTC 001440 001441 CTCTCTCGTC AGTTCCCTTG GATGCTGGAC ACGGGAGCCA CCTGGGCGAG GGGAGCCCAT CCAAGTGGCT GTGCGTCGGG 001520 001521 AAGAGTCTGC CCAGGACTGG GCTAGACCAG AACTTAGAAT TAAGGAGTGG Tggccaggct tggtggctca cacctgcaat 001600 001601 cccagcactt tgggaggccg aggcgggtgg atagcttgag cctaggagtt tgagaacagc caacatggcg aaactctgtc 001680 001681 tcttaaaaaa taaataaaaa |
Predicted Small Protein
Name | NONHSAT040243_smProtein_1349:1633 |
Length | 95 |
Molecular weight | 9706.8623 |
Aromaticity | 0.063829787234 |
Instability index | 61.6946808511 |
Isoelectric point | 6.80609130859 |
Runs | 13 |
Runs residual | 0.00948196114709 |
Runs probability | 0.0417906594377 |
Amino acid sequence | MLGSSPSGHTSIFPAAGGNCRCLYLSPSPRPLSSVPLDAGHGSHLGEGSPSKWLCVGKSL PRTGLDQNLELRSGGQAWWLTPAIPALWEAEAGG |
Secondary structure | LLLLLLLLLLLEELLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLLL LLLLLLLLEEEELLLLEEEELLLLHHHHHHHLLL |
PRMN | - |
PiMo | - |