NONHSAT041711
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041711 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1340 nt |
Genomic location |
chr15+:38625007..38626346 |
Exon number |
1 |
Exons |
38625007..38626346 |
Genome context |
|
Sequence |
000001 CAGCAAAATG CCGTGACTGG GTAGCTTATA AACAAAAGTA ATTTGTCACC ATTCTTGAGT CTCAGAAGTC CACTCAAGGC 000080
000081 ACAGACTGTG CCTGGTGAGG GCCCACTTTC AGGTTCATAA GTGATACTTG GCTATATCCT CACATGGTGG AAAGAACAGG 000160 000161 ACAGCACTCT GGAGTCTCTT TTATCAGGGC ACTAATCACA TTCATGAGGG CTCTACCTTC CTAATTGAAT CATAGCCCCA 000240 000241 CCTCCTAATA CTATCATATT GGTAATTAGA CTTCCACATA TGAATTTTGT GGGGGACACA AACATTCGGA GTATAGCACA 000320 000321 GGTTCACAGG AAAAACGTAA GGAAAAGAGT ACTCAGAATA TAGGGTGATA GATACATATA ATTTTAAGGT AATTCAAAGG 000400 000401 AGGGAGTGAT TAACTTGTGA CTGAATCAAC AAAGACTTTT TGATGAGTTT GTAGCTGAGG TTAAGCATAA AACAGTTTTT 000480 000481 TAGTGGAAAA TTTGAAGCAT GTCATTGTTG GGCAGAGGAA TTGACATGTA CCAGAAAATC AGAAGTATGA AACATCAGAT 000560 000561 GCTAACAGAA AGAGACAGGT ACATCAATAT TTGTAAAGCA AAGAAATGAG GATGAAAATC AGTAGGAACA AGCCATATTA 000640 000641 AGAAAGTATA TTGACTATTT TAAAGTAACA GACTGTGTGT TCATTTATTC TTTTGTTCAT TCTTGGAGTT TCTTATTCAC 000720 000721 ATAAGGAAAG CCACTATATA ATTTTTAATA AGATGGATCC ATTATAATAG AAATTAAATA GCAGAAATAC ATATAAGAGT 000800 000801 GAACAGTGTG ACAGTACCTA GTCTTGGTAA GAATATGGAG CACCGATTGT GAATACATGA ATTGTTCAAA CCACCTCAAA 000880 000881 AATCATTTTC ATTATGAGAA CTGGAACATA TGTATATCCT GTGACCCAGT ATTTCTATTC TTTGTCTTCT AGAGAAACTT 000960 000961 TTTGTCATAT ATACCATAAG GCCTATACAC TATTATTCCT AGCAACATTT ATTGAAATAG CAAAAAATTA GAACTGCCCA 001040 001041 AACATCCATA GACAGAGAAT AGATTAATAA ATTGTAGTGT TCTTATCCAG ACTCTGCCGC CTAGTAACAT TTATTTTAGG 001120 001121 CAAGTTGCTT AATCCCTTTG AATTTTAGTC TCTTCATACG GAGTAGGTTG ATAATACTAT GTACCTCAAA GGATTATTGT 001200 001201 GAAGATTGAG TTAACCCATG TAAAGTAGTT GAGACTGTCT GATACACAGA AAATGCTCAA TATATTTTAG CTATCATTGG 001280 001281 TACACAGAGG TCAAAATGAC TGATTATTGC TACACATGTC AAGGTGAATG AATTTCACTG |
Predicted Small Protein
Name | NONHSAT041711_smProtein_893:1030 |
Length | 46 |
Molecular weight | 5389.1637 |
Aromaticity | 0.222222222222 |
Instability index | 62.898 |
Isoelectric point | 8.89019775391 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.023986171045 |
Amino acid sequence | MRTGTYVYPVTQYFYSLSSRETFCHIYHKAYTLLFLATFIEIAKN |
Secondary structure | LLLLEEEELLLEEEEELLLLHHHHHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | oooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii |