NONHSAT042264
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT042264 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1927 nt |
Genomic location |
chr15+:45803334..45848928 |
Exon number |
6 |
Exons |
45803334..45803403,45805896..45806161,45807971..45808090,45828283..45828407,45839278..45839365,45847671..45848928 |
Genome context |
|
Sequence |
000001 ACCTAAGCGA TGAAATCCAA AGGTGAATCT TTTGGTTGGT GATTTTGATG ATAGCCACAA AGCAAGCAGG CTGTATGGTA 000080
000081 GCCTTGAAAA CCAACAGGCC ACAATCACAG TGAAAACCTC AGGTTGGCAG CCACTGGAGG ATACAAAATG AGTTTGGATC 000160 000161 TCCTTCAATG CCCCATTCCC AGAGAACTGT CATTATTTGA CCTGCTGGTA GTTCCCTAAA GGACGTGCAA GGATGTTTTT 000240 000241 ATTTGACTGG ACACTTGAAG CTTGCCCTGT ATGAACAGCC CCCATCTTCC CATGCTTGTC AAAAATCAGA GGCAACTAAC 000320 000321 ACTGCGGCTT CCTGAGAGTC TCACTCTGTC ACCCAGGCTG GAGAGCAATT GCACAAACAC TTGGCTCACT GCAGCCTCAA 000400 000401 CTTCTTGTCC TCAAGTGATC CTCCCACCTT AGCCTCCTAA GTAGCTGGGA CCACAGGGAA CTCCGGATGT GACTCCTGTT 000480 000481 ACATGAAAAT GGAAGAGGTC AGAGTTGTCC AAGAGGGAGG CCAGCCACAT CCAGGCAGGG CCCCCATGGT CAGAACCCTG 000560 000561 CTAGAGCCAT CAAGGTCCCA GAGCTCCCAA GATGGTGGCA AGCCTTTTGT TCTCTGACCA GAGGTTCCTG GCCTCACGGA 000640 000641 TTCCAAGGAA TGGAACCTTG GGCCATGCGT GCACTTGATT TTGCAGATGA GTCTGGAAGT GTTAGTTGCA AAGATATGCA 000720 000721 TTTACTTCTC TGGCTACAAA AAAGAATAGA AATGCACAAA GCAGAGCAGT GTGAAGAAGA AGAGGCGATG ACCCCTAGAC 000800 000801 CGACCAAAGC CCGTGCTCCA CTGCCCAGTG CCTATGTCCC ACCACTGTCG CTGCCACCCT GCCCGAGAGA AAGGCTGAAG 000880 000881 GGGATGCTAA AGGAGATAAA ACCAAGGTTA AGTAGGAACT GCAGAGAAGA TCCACAAGGT TGTCTGCTAA ACCTGCTCCT 000960 000961 CCAAAGCCAC AGCCGAAGCC CAGAAAGGCC TCTGCAAAGA AGAGAGAGAA GGTACCTACA GAGAAGAAGG GAAAAGCTGA 001040 001041 TGCTGGCAAG GAGGGGAATA ACCCTGCAGA AAATGGAGAT GCCAAAACAG ACTAGGCACA GAAAGCTAAA GGTGCTGGAG 001120 001121 ATGCCAAGTG AAGTGTGTGC ATTTTTGATA ACTGTGTACT TCTGGTGACT GTACAGTTTG AAATACTATT TTTTAATCAA 001200 001201 GTTTTATAAA AATGCAGATT TTGTTTAGCT TTTTTTTTTT TTTTTAAGCT ATGTTAGTAC ACAGAATACT TCATTGTTGT 001280 001281 TTTGGGGAGA AGGGCCATAT GTCACTAATA GAAAGCCCCT GAAGCTGGAC TGATGTGGGG AAAACACCTT TTCCTTCTGG 001360 001361 TTTTGAGAGA CTTCCTCTTG GGTCCCAGGA AGAGGGATTC CCTGACTTTG ATACACATGG CCACCTTGGT ATAAAAGCCT 001440 001441 TGTGGTATGG AAAAACAAAT TCGTTTTTTA TGTCCTCTTC TCTGTTTCTA CCTTTCAGAA TGGACTTAAA TCCCTTAAAC 001520 001521 CCAGACATCT TCTGGGACCT GACCCCCAAT AATTGGTTAC CAGTGTGTCA GGCAATCTGG ACTTTGCCCT CAAAAGAGCA 001600 001601 GTGGTTCCTG TTTCTAGGTT GTGGATCTTC AGATAAATTC TGTCATTTTC CTTTCACTTC CTGAAAGCCA GGGTCGGTTC 001680 001681 ATGAAAAGCT ATGAAACAGC ATGCTAAATG TGAAATGTCA ACCCTCACTA AACTTTGCCG GTTCAGAGCA TCAGATGAAG 001760 001761 ACTTCATTGG GTTTTACAGT GGCTTTCTGA TTTTTGGTAG TCCATTGAAG AAGGGAGTTT GAAAGTTGTT GTATACTGTT 001840 001841 AACGATTGTC TGCCCATGTC CTGCCCAAAA TACCATGATT CTTTATGGAA ATTATCTTTA ATAAAGCTGG ATACAGTTTG 001920 001921 GCTTGGG |
Predicted Small Protein
Name | NONHSAT042264_smProtein_1469:1663 |
Length | 65 |
Molecular weight | 7485.5723 |
Aromaticity | 0.1875 |
Instability index | 49.671875 |
Isoelectric point | 4.74859619141 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0495716304541 |
Amino acid sequence | MSSSLFLPFRMDLNPLNPDIFWDLTPNNWLPVCQAIWTLPSKEQWFLFLGCGSSDKFCHF PFTS |
Secondary structure | LLLLEELLEELLLLLLLLLLLLLLLLLLLLHHHHHEEELLLLLEEEEEELLLLLLLEEEL LLLL |
PRMN | - |
PiMo | - |