NONHSAT048153
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048153 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2601 nt |
Genomic location |
chr15-:88402984..88405587 |
Exon number |
1 |
Exons |
88402984..88405587 |
Genome context |
|
Sequence |
000001 AATAAGGGGT TTCTTTTAGG AATAAATGAG GTGGAAAAAG TAGGACAGAG CCAGATCTCA GAGGAGCAAG TTCAGTGGAA 000080
000081 CGATGATTTC TAACTTGGGA GTGGGTCTAA GATGTAGCCA TCCATTCCTT CCATTCCTTG TCCTCTTGAG TGAATCTCAT 000160 000161 TCCAGTGCTC ACACTTGCCC TGCAAAAAAG GCCATGGCAC AAGATTCTCT AGATTATTTG TATGAAGACT GGAGGTGAGC 000240 000241 AGCATCCAAC ACCTCTGTTA GAGTTCTTTA GAATAGAGGA GTTTTGTCTT ATATTTTAAT CCAGGAACCT TCCTATATTT 000320 000321 AAAAAGTTTA GAAATAATAT GTACAGAAAG GACCTATGGG GATAGGAAAG CTTAATAATA CAAGTTATTT TCCCTTAGAA 000400 000401 CAGAGGGGAA GGAGCTGCAA AGTGACTGCT AATGGAGGAA CGATCTGCTG GCTGGGGGAA ATGTGGCCTG AGACTAGAGA 000480 000481 TGCAGAGCAG GCATCTCTAG AAGGAGAGAT GATGCCAATA GAAGCCCCAG GAGGGAACTG GCCAGTGAAT ACAATTTTAT 000560 000561 AAAGATTCTC AGTACTTTTT CTGAAAAAAT TCCTAAAATT TTCAAGGGCG CGTCTAGCCC TCTGCCTCTT TAGAGGTGAG 000640 000641 CTCAGTGCTA CTTCTGGGTT CTTAAGGCAA ATGCCCTACA AACACCAAAG TCTTGTATTT TCCACTCTCA GCCGGCACTG 000720 000721 GCTAAGTGGG ATTTTTTTTT TCCCTTCCCT AAGTGAAAGG GACTTGTTTT CAGGAGAAGT GTCCTTTAAA CATCCAGCTA 000800 000801 AAACTGGAAG TAATTTTTTG CATGAATGGC TTTTTACAGC TAGGTCTACA GCAGAACAAA ACTTGTATTA AACTAAGTGC 000880 000881 TACTTTACAT ATCTTATTTC AAGGGAAATG AAGGATTTAT TGTCGTGTAA ATGATATACA CTGATTTGTT TCCTACTGGA 000960 000961 CATTACATGT CCCTTTATCT CTAGGCTGAT GTTGTGCAGC AAACTTTCAA TATCTGGAAA ATCAGCTGGT ACCTACTTCA 001040 001041 GTGCATTATT AGGATATTAC GTTCCCTGAG AGGAATTTTG CCAATGAAGT TTAGGTACTG TTGTAACTGA TTTCCATCCC 001120 001121 CCCTCCCTAA GCTTCTGTAC TAAGTATATG TAAAGCTATT ATATCTTGTC TGATCCCATG TGTTCATGTG TGTTTCTCAA 001200 001201 TGTTTGCATA AATATATTGG CAATCTGAAG GGTTAGCTGG CTTATGGCAA CTGCTGAACA ATGGTATGTT TGGCATGTGG 001280 001281 GACACCTGAT ACCTGGGCAC ACCTGTTCTG AGGCCAAGCT AATTTTACAG ATTTTGGAAA AGAAAAAACA GCAGCAACAA 001360 001361 CAACAGTGTG GCTTGAATTA AGGAAAGTTT AACAATGAAT ACAGTATTGC CAAGTCATCA TTTATGGGTG GAGACGTTGA 001440 001441 CCACAGCAGT TGAGGTGCTT TCAACTGGAT CTTATGCCCT TTATTTTAAT CCCAATTGAT AGTTCCTCAT TTGTATTTTA 001520 001521 TGACTTAGAA ATACTCCTAC GTGATGCTCG TTTGTTTTTC TCCCAGGCTT CTGGAAAGTG CTGATCATGA TTGCTTCCTA 001600 001601 TCATTTGGAT CCCAAAGTTG ATAACTTAAC ATAAGTGACT GAGGTTTTAG TAGAACTGGG TTTTATTAAT CGTATCTCCT 001680 001681 CCTTGAGGTG CTGTTCCCTT CATTCCTTTC CTTTATGACA GGTGAATGCA TTGGCTATGC TGATTTTATT TACATCCTGG 001760 001761 CGAGTCTTGG AGAATCAATC TCGTTAAAAT GATGACTGCA TTTGCCTTTG GAGAAGAGGT TTATTGTCTA AGTAAAACTC 001840 001841 TTATGTGAAG GTGTCATTTA TGTAAAAAAA AAAAATTCTA ACTTGATAAG ATGGCCACAG GTTAGAGGGG TGTGTTCTCA 001920 001921 GTTGATATTA AGGGATATGT TGAAAAGGCA AGTGCCCACC CTCTATTCTT CATCTCACCC TTCCTTTCTC CCCAACCTCA 002000 002001 AAAGAAAACA AAAAATTATT TTTTTAAATT GTATTAGTAA TTTATGTTTA ATACAAAAGG ATGATTTAAT GGTATCACCA 002080 002081 AAGGTTGTTT CTCCCATTGT GCATGTCCTT CAGTCTCGGC CCCATACCCA TCACCCCATT CTTCACCCTC ATGCTTCCAT 002160 002161 CCCAAGGCAA ACATGTGTCT TCATCGGAAT CTATGGGTGT TGAAGTTAAA TGTGGGGGCA GAGATTTAAC ACCATGACAC 002240 002241 TAATACAAAT CAACCATTCT TCACTTTCAA ATGGTTAATC ACTACAGGAA GGCGAACTCT TTTCTTGGTT TTTGTTTAAA 002320 002321 AACATTTTAT ACATATATAT GTATATATGT GTGTGTATGT ATGGACATAG GTATGTATAT GCACATGTAC ATGTATATAT 002400 002401 GTATATATCC ATCTTCAATA TAAATATATC ATAAGTGAGA GTTGTAAATA CTCCTTGGTC ATATGTCTGT CTTTCTCATA 002480 002481 GTATCATATC TTCAATGTTA TGTTAACAAC TCCATTTATT GATTGATGAA ATCGTGTGTA GACCTGTATC CTCCTGACAT 002560 002561 AGTTTATGTA GGGTCTCTTC TCAAATAAAG TATAAAACAA C |
Predicted Small Protein
Name | NONHSAT048153_smProtein_2270:2422 |
Length | 51 |
Molecular weight | 6046.3035 |
Aromaticity | 0.22 |
Instability index | 83.0742 |
Isoelectric point | 8.31365966797 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.0630756807228 |
Amino acid sequence | MVNHYRKANSFLGFCLKTFYTYICIYVCVCMDIGMYMHMYMYICIYPSSI |
Secondary structure | LLLHHHHHHHHHHHHHHHHHEEEEEEEEEEELLLHHHHHEEEEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooo |