NONHSAT048195
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048195 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2698 nt |
Genomic location |
chr15+:89182274..89198879 |
Exon number |
4 |
Exons |
89182274..89182409,89182574..89182825,89193466..89195541,89198646..89198879 |
Genome context |
|
Sequence |
000001 GGCAGACGTG AGCTGAGGGC GCAGAGGCAG GCAGGTGAGA GCGGGAGCTG GAGCAGCAGC TGGGGAGGCA GCGGGAGGGG 000080
000081 CCTTCCCGGT CCCCAGGCTG CGGGGCAGGC CAGAGGCCCT GGGACACACG GGCAGGCATC TCTGAGGGTC CCCAAGGAAC 000160 000161 ATGGCTGGGA GCCGTGAGGT GGTGGCCATG GACTGCGAGA TGGTGGGGCT GGGGCCCCAC CGGGAGAGTG GCCTGGCTCG 000240 000241 TTGCAGCCTC GTGAACGTCC ACGGTGCTGT GCTGTACGAC AAGTTCATCC GGCCTGAGGG AGAGATCACC GATTACAGAA 000320 000321 CCCGGGTCAG CGGGGTCACC CCTCAGCACA TGGTGGGGGC CACACCATTT GCCGTGGCCA GGCTAGAGGT CCCCTTCCCA 000400 000401 TCCTCTCCAA CGGCAGCTGA GTGAAAGCAA GCTGACTGGC CTGTGTGACC AGAGCAGGGC AGGCTGTCCA TGTGGGAGGC 000480 000481 GAGGCGAGGA ACGCGGGGCT GGGGCAGTCA CAGCTGGGCG CCTGGGCTGC TGGAGGCCTG GAGTGGTCGT TCACTCTTCT 000560 000561 GGCTcagtgt ggcagtggca ggcgggctct ggattcatcc cactggcttc aaggcctggc tttgccacta actagccgtg 000640 000641 tgactgtccc agttatcaaa tggtgcttgg caaatcacac caaaacttac cggttcaaac aatgtcaata cttatttcgc 000720 000721 tcggccacct gcagtttggg caggtgctct gcagcaggac aggccgtcag ttaaggcacc ttgaaggctg ggggctggaa 000800 000801 ccattggaag gtttgctcac ccacctgtct ggtggctggt gctggcctgc cttggacaca tcactatctc ggtggctttt 000880 000881 ccccgtggtc tttccagcat ggtggctttg gggtggccag acatttattt atttatttat ttattgagac ggagtcgtgc 000960 000961 tcagtcgccc aagctgtagt gcagtggcac gatctcagct cacttgcaat ctccctccca ggctcaagca attctcctgc 001040 001041 ctcagcctcc cgagtaactg ggaatagcca cggcgcatgg gtaatttttg catttttagt agagacagag tctcaccatg 001120 001121 ttggccaggc tggtctcaaa ctcctggcct caggtgatcc acctgcctca cctcccaaag tgctgggatt acagacgtga 001200 001201 gacaccgtgc ctggcTGGTG GCCGGACTTC TTATAGAATT GCGGTCCCAG AGAGAAGTCa gaagtcatac aggccagccc 001280 001281 atatgcaatg ggaggggagt ttgattccat cttttttaag aagagtgtca aggaatttgc aaacttgttt taaaaTCATC 001360 001361 AGAgtaagcc tgggcatgtc actcctctgc atttcagata tttcctttgt aaaactcagt taaatgcagt gctccctcct 001440 001441 cactgttagt tttctgtggc tgccgtaagg aagccatcaa cttagtgatt cacagcaaca cagatgtctt ctcttacagt 001520 001521 tctgtagttt cgaagttcag cgtgggtctc actggtctaa aatcaaagtg tcagtggggc taggttcctt ctggatgctc 001600 001601 tggggaagaa tccatttcct cgccctttct ggcttctaga ggctgcctga ataccttaac tcacggcccc tccctccatc 001680 001681 ttcaaagcca gcaacagcct gttttcctca tgtggattca ctctgacctc cacatgtaag gaggcttgtg attatgttgg 001760 001761 gaccacatgg gtaggccagg tgatctcccc atttgaaggt cgactgatta gcaatctaag ttctgcccgg aactttaatt 001840 001841 cctctttgcc aggtaatgca ttcacagatc ctggggacta gggtgtggac atctttggga ggtcattatt ctgcctgcca 001920 001921 taatagaatt gttgggaaga ttaaacaaca taatatacat gacgtatgtt gaggcacgct tggcacctgg gaaatactca 002000 002001 GGATGTACTA ACCATTGCTC CTACACAGTT CAGCTCCTGA AGGAGTCCAG GTGGGCTTTT GGCACAGAAT GAAACTATCA 002080 002081 GGtgtgagga gggtcctagt gcaatctctt cttttcaaag atgatacatt tgaagcccag ggaggactga taatttgccc 002160 002161 aaggtcacac agccagtcaA GGAGGGATTG CTCCCTTGCC AGCCCCAGCC CCACCCAGAA GATGCTGGGT CATGTAGGGG 002240 002241 TGGGCACATG TCTTCCTGGC CAGATCCTGC AGCTCCTGAA AGGCAAGCTG GTGGTGGGTC ATGACCTGAA GCACGACTTC 002320 002321 CAGGCACTGA AAGAGGACAT GAGCGGCTAC ACAATCTACG ACACGTCCAC TGACAGGCTG TTGTGGCGTG AGGCCAAGCT 002400 002401 GGACCACTGC AGGCGTGTCT CCCTGCGGGT GCTGAGTGAG CGCCTCCTAC ACAAGAGCAT CCAGAACAGC CTGCTTGGAC 002480 002481 ACAGCTCGGT GGAAGATGCG AGGGCAACGA TGGAGCTCTA TCAAATCTCC CAGAGAATCC GAGCCCGCCG AGGGCTGCCC 002560 002561 CGCCTGGCTG TGTCAGACTG AAGCCCCATC CAGCCCGTTC CGCAGGGACT AGAGGCTTTC GGCTTTTTGG GACAGCAACT 002640 002641 ACCTTGCTTT TGGAAAATAC ATTTTTAATA GTAAAGTGGC TCTATATTTT CTCTACGC |
Predicted Small Protein
Name | NONHSAT048195_smProtein_659:946 |
Length | 96 |
Molecular weight | 10894.6362 |
Aromaticity | 0.147368421053 |
Instability index | 59.3021052632 |
Isoelectric point | 7.88507080078 |
Runs | 20 |
Runs residual | 0.0814753418981 |
Runs probability | 0.0480657127717 |
Amino acid sequence | MVLGKSHQNLPVQTMSILISLGHLQFGQVLCSRTGRQLRHLEGWGLEPLEGLLTHLSGGW CWPALDTSLSRWLFPVVFPAWWLWGGQTFIYLFIY |
Secondary structure | LLLLLLLLLLLHHHHHHHHHHLLLEELEEEEELLLLHHHHHLLLLLLHHHHHHHHLLLLL LLHHHLLLLLLEELLEEELHHHHHLLLEEEEEEEE |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTo |