NONHSAT051870
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT051870 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2818 nt |
Genomic location |
chr16-:779766..783334 |
Exon number |
3 |
Exons |
779766..780655,780843..781000,781565..783334 |
Genome context |
|
Sequence |
000001 CACCAGACAC GGGATGTGGA CTGTGTCCTC ACAACAGGTG CGGTCACGCC GTGCGGCCCT GAGCCCTCAA GCCTCCTGGT 000080
000081 CTGATTCCTG AGCCCTGGGC ACAGGTGGCG ACTGCCCAGG ATCCTGCCTG TGGGGGCCCT GGCTGGAGTG TGGGGGCTCG 000160 000161 CATGCGTGCA CGTACCTTCG TCTCTCCCCT TGGAGCCAGG TGGGCCCATT TGCAGCTGGC CTGTCTTGGG GACCTGCAGC 000240 000241 CAGGTGGCGC TCAGTAATAC CTCCTTGTTG GCTCTGAAAT GAGTCTTTGG AGGTGGGCAG AGATTCTCGA ATGCAGCCTC 000320 000321 TTCAGCTCCC ATGAGTCACC CCATTCCTGA GTCGAGCAGC CCCACAGTCT CCCAAATGTG AGGCAGAAAA GCAAACTGTg 000400 000401 gccgggcatg gtggctcacg cctgtaatcc cagcactttg ggaggcagag gtgggtggat cacgaggtca ggagttcaag 000480 000481 accagcctgg ccgagatgat gaaaccccat gtctactaaa aatacgaaaa ttagccggga gtagtggtgg tgctcctgta 000560 000561 atcccagcta ctcgggaggc tgaggcagga gagtcacttg atcccggggg gcagaggtcg tagtgagccg agatcgtacc 000640 000641 attgcactcc agcctgggcg gcagagtgag actccgtctc aaaaaaaaaa gaaaaGCAGA CTGCCTAAGA GGATGGACAG 000720 000721 ATGGACACTG GGTGAGCAGA GTGGCCTGGC CGCTGGCACA CCTCCCTGGG CAGGACCAGG CAGCCTCCAG AGGGGCTTCA 000800 000801 GGAGTGACCG GGCCTGGCCT CCCCACCACG GGCTAGGGTG GACATTTGGG GCCTTCTGGG GCCAAAGTGC AGACTGCTGG 000880 000881 GGATGCAGGT GGCTTGGATG TTCTCTGACT TTGTTGCTGG GATCTCCGCT AAAGAGTGTC TGCGCTGTGG CTTCTTTGCA 000960 000961 GGAGAAGTTT TCAGGTTGCT GGAGGAAGAG GGCGTCTCCC TCCCCGACCT GGAACCAGCC CCTCTGGACA GCCTGTACGT 001040 001041 ATGTCTGCCA CCAAGAACTG TTATTTTAGC TTCTAACGCT GCCTCTGAGG ATAGCATCCC CCTGCTCTGG GCTTGCCTCC 001120 001121 CCGCAGCCCA TCTTGGCGTC CACAGAAGTG GCTGGATAgc caggcgcagt agctcacgcc tgtcacccca gcactttggg 001200 001201 aggccaaggt gggcagatca cctgaggtca ggagttcgag accagctcgg ccaacatggt gaaacctcat ctctactaaa 001280 001281 aatacaaaat ttagccagac atggtggtaa tccatgccag gccctgtaat cccagctact tgggaggttg aggcatgaga 001360 001361 attgcttgaa cccaggaggc ggagcttgca gtgagccaag atcacgccac tgcactccag cctgggcgac agagcaagac 001440 001441 tccgtctcaa aaaaaaaaac aagaaGTGGC TGGGCCCCTG TGATGGCTGG TGACACAGGA GCTGTTCCTC TGTGTCTGTG 001520 001521 ACTTGTCTCC CACCTGGAAA TGCAAACGCT CATGTGTGAG GGACAGAGGC CCTGCTCGGG AGGTTGGCAG GCAGCAGCCC 001600 001601 CAGCTGTGCT GAGGCCCCTC CCTCCTTGCC AGGTGCAGCG GTGCCTCTGC AGAGGAGCCC ACCAGCCATC GGGGAGGGGG 001680 001681 CTCGGGGGGC TACCTGGAGC ACGTGTTCCG GCACGCGGCC CGAGAGCTCT TTGGAATCCA TGTGGCTGAG GTTACCTACA 001760 001761 AACCCCTGAG GAACAAAGAC TTCCAGGAGG TGACACTGGA GAAGGAGGGC CAGGTGCTGC TGCACTTCGC AATGGCGTAC 001840 001841 GGCTTCCGCA ACATCCAGAA CCTGGTGCAG AGGCTCAAAC GAGGGCGCTG CCCCTACCAC TACGTGGAGG TCATGGCCTG 001920 001921 CCCCTCAGGC TGCCTGAACG GCGGGGGCCA GCTCCAGGCC CCAGACAGGC CCAGCAGAGA GCTCCTCCAG CACGTGGAGA 002000 002001 GACTGTACGG CATGGTCCGG GCTGAGGCGC CCGAGGACGC GCCTGGGGTT CAGGAGCTGT ACACACACTG GCTGCAGGGC 002080 002081 ACGGACTCGG AGTGTGCAGG TCGCTTGCTG CATACGCAGT ACCACGCCGT GGAGAAGGCC AGCACTGGCC TGGGCATCCG 002160 002161 GTGGTAGGGG CTGCAGGACC AGGACTCCCA GGAGGCCGTG TCCATGTGTG ACAGCAGAAC CACATGCCCC AAGACCCCAG 002240 002241 GGCTTCCCCC AAAATTCTGA GTGAGCTGCA GGGTGTGCTG GGACCCGAGT AGGAGCTAGG ACTAGCCAGG ACCCGCAGCC 002320 002321 GCCTCGTCAC CTCCAGTTGG GTGCCTCTGG GTTCCCACTG GCTCTGCCCA GGTGGGGTGG GGTGGCCCAG GCAGCAGAAG 002400 002401 GTTCCCTGAG GTCCCAGAGC CTGTTCCGTT GGCCCTGGGC CGAGGCCCAC AGGTGCTGCC CTTGCTGCTG CTGGTCGGGC 002480 002481 ACCCAAGTGC GTGAGGGGCT TCAGCCTGTC CCGGGGTTGC CTGAGGCAGA GCAAGACGGG TTCTCACCCC TGACTTCTGG 002560 002561 AGGCTTCCCT TGAAGCTCTG TGCAAAAGGT GGGAGACAGA GCTGGACCTG CAGGGGTGGT CCCGCCACAA CCCTGCGTGT 002640 002641 GGACCCTGGC AGGGGGGGGT GCCAGGCCCC TGGAAAGCAG GGGTTACCGT TACGAGGCTG TGGTCCGGGG CAAGCCAAGT 002720 002721 ACGAAGCAGC AGCCATCGCG GGCTGCATCA TCCCCCAGCC AGGTCCCCAC CAGGCCTGTC TCCCAGCGTT TGTCTAATAA 002800 002801 ACGCACCCCT CCTAAAAC |
Predicted Small Protein
Name | NONHSAT051870_smProtein_407:622 |
Length | 72 |
Molecular weight | 7241.9862 |
Aromaticity | 0.0140845070423 |
Instability index | 51.4197183099 |
Isoelectric point | 6.53692626953 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.0363206343598 |
Amino acid sequence | MVAHACNPSTLGGRGGWITRSGVQDQPGRDDETPCLLKIRKLAGSSGGAPVIPATREAEA GESLDPGGQRS |
Secondary structure | LEEELLLLLLLLLLLLEEEELLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLLLLHHHL LLLLLLLLLLL |
PRMN | - |
PiMo | - |