NONHSAT051873
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT051873 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1488 nt |
Genomic location |
chr16-:783702..790997 |
Exon number |
4 |
Exons |
783702..784871,787186..787329,789643..789738,790920..790997 |
Genome context |
|
Sequence |
000001 AGTGCGGCCG TCATGGCGTC GCCCTTCAGC GGGGCGCTGC AGCTGACGGA CCTGGATGAC TTCATCGGGC CGTCTCAGGA 000080
000081 GTGCATCAAG CCTGTCAAAG TGGAAAAAAG GGCGGGAAGT GGCGTGGCCA AGATTCGCAT TGAAGATGAC GGGAGCTACT 000160 000161 TCCAAATTAA CCAAGACGGC GGGACCCGGA GGCTGGAGAA GGCCAAGGTC TCGCTAAACG ACTGCCTGGC GTGCAGCGGC 000240 000241 TGCATCACCT CCGCAGAGAC CGTGCTTATC ACCCAGCAGA GCCACGAGGA GCTGAAGAAG GTTCTAGATG CTAACAAGGG 000320 000321 GTGCACTTCG TCTTCGACAC CGCCTTCTCA AGGCACTTCA GCCTCCTGGA GAGCCAGCGA GAGTTTGTGC GGCGATTCCG 000400 000401 AGGACAGGCC GACTGCAGAC AGGCGCTGCC CCTGCTGGCC TCTGCCTGCC CAGGTGTGCT CATGGTGCGG GTGGTGGGAG 000480 000481 AGTCAAGTTC AAGTGCAGTT GAAACGTGAG GTGATATGGA CACAAATGAC AAGGCGGGGG CATGGGGGGT GGAGACGCAA 000560 000561 GCAGGTTTTG CGGGACGGGT TGGAAATGTT GGCACAAATG GCCTTTTCTG GAGAAGAGGC TGCCCTCCCG TGGGAGCCAC 000640 000641 GCGCAGTCAC CTCAGGTCCC TAGGCGGTGT CGCCTGCACG CCGAGCTCCG CGTGGTGGTG GGGAGAACAG GAATGAGCAC 000720 000721 TCTTTAATGT CATCATGATC TCCTGTATGA GCGGGCCCGC CCCCAGAATG TCGTGCTGCT GCCTGTGGGT GCGGGGGCCG 000800 000801 CCGTGCGCCC CCGCCAGCCC CGTGTGCCCC CTGTCACCTC AGGCTGGATC TGCTATGCCG AGAAGACTCA CGGCAGCTTC 000880 000881 ATCCTCCCCC ACATCAGCAC CGCCCGGTCC CCGCAGCAGG TCATGGGCTC CCTGGTCAAG GACTTCTTCG CCCAGCAGCA 000960 000961 GGTAACGGCG TTGGGCCAGC CCCAGACTCA GGCTGGGGAG CGGCCAGAAG TGACTTTGCT GGCCTCTTGC CATGAGGCTG 001040 001041 CAGGAAACAG AGTCCTCGCT GTGCTGTGCG GCCTTCCCCA GCACACCTCC ACCCTTGTTC CCTCCTGGTT CAGGCCCTTC 001120 001121 CTCTTCTGCA GCAGAGGGCT TCGTTCTGAT CCAGAGGTGC TCACTGCTCA CCCAGAGGCA GCCAGGCCTG AGGCTGAGGG 001200 001201 AGCAGGAGGC CCTGGGCAGT CCGGGCCTGG AGCCCACCCC TCCGGCCACC AGGTCCACGA GGATGCCCAG CACGACCCCC 001280 001281 ACCTGAGGCC CAGCGGGATA GAAGCCTGAA GACACTCAGC CAGCAGGGGG CGGGAGAGGG CGAGGGCGGC CCCGGTGGTG 001360 001361 CCTGGGCCTC GAGCGCCCAT GTCCCCTGCG GCACCTCTTG CCTGACTGCA CGCGGATTTT CACCCGGGGC TGGAGCTGGT 001440 001441 TGGTTCCCCC GTGACATCCG TTTCCCCGGC TGCTGTGCAG TGAGCCGG |
Predicted Small Protein
Name | NONHSAT051873_smProtein_1031:1285 |
Length | 85 |
Molecular weight | 8880.0253 |
Aromaticity | 0.0357142857143 |
Instability index | 80.3952380952 |
Isoelectric point | 7.74066162109 |
Runs | 10 |
Runs residual | 0.0149378222627 |
Runs probability | 0.0486309839251 |
Amino acid sequence | MRLQETESSLCCAAFPSTPPPLFPPGSGPSSSAAEGFVLIQRCSLLTQRQPGLRLREQEA LGSPGLEPTPPATRSTRMPSTTPT |
Secondary structure | LLLLLLLLLEEELLLLLLLLLLLLLLLLLLLHHHLLEEEEEEEEEEELLLLLLLEEHHHH LLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |