NONHSAT052011
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052011 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
1480 nt |
Genomic location |
chr16+:1834461..1836131 |
Exon number |
2 |
Exons |
1834461..1834612,1834804..1836131 |
Genome context |
|
Sequence |
000001 aatctcgatg acggctcact gcaatctcca cctcccaagt tcaagcagtt ctcctgcctc agcctcccaa atagctggga 000080
000081 taacaggcac acgccaccac gcctggctaa ttttttttgt atttttagta gagacagggt ttcgccatgt tggccgaggc 000160 000161 gggcagatca cttgaggtca gatttgagac cagcatggcc aacatagaga aacagtctct acgaaaaaaa taaaaaatta 000240 000241 gctgggcatg gtggcgcacg cctgtggtcc caggtactct ggaagctgag gcgtgggagg ctgaggcacg agaattgctt 000320 000321 ggacccagga ggcggaggtt gcagtgagcc gagattgcgc cactgtactc cagcctgggc gacagaatga gaccccctct 000400 000401 caaaataaaa aTATACATTT ACTGTAAAAA TATATTTGTC CACCACGTGG AATGATCTGG ATTTGCTAAC CCATAAAGCT 000480 000481 GACCGGGACT CATTGTCCAT GGAGAGCGCA CTCGCCTTCC TCGGGGAGAT GGTGCTTCGC CTCCTTCCTG CACTTCCAGC 000560 000561 CCCACTGCCC CACCCGGCAG GCTCATGCTG ACTGTGCTTT GCTGACAATC TGCTTAGGAG CTGCCTCAGT TTGCTGAGAA 000640 000641 GTGAAATGTT CTTGGGGGAA CCCTCAGGGT TGTTGTCCCG GTTCCTGACA CTAAGGCCTG CATTTACCAT GGTGCTCAGC 000720 000721 CCAACACACC AGACAGGCAC CATTCCCCCA CCTCTGCCAA CGAGGAGAGC CCCTGGGGGT TAACACTGCC GCTGGTGCCA 000800 000801 GCACTGATGG CAGCATGGCA GTCAGGACCC AGGCCTGACA GAGTCCCCGG CAGCTACAGA AGTGCATGCT CCCTCTCTGC 000880 000881 ACGGGCCACT TCTGGTACCT CTTGGTGTTG AAGTAATTTA AGTCAGAACC CCTTTTATTG CCCCAGGGGT GACCGGGAGG 000960 000961 CCGTGGTCTC GGGGCTTTGT GTTTGCAGGA GTGTGGGGCT GGGGCTGCCT TTTCCGCGTC CCCTGGAGGA GACCTCAGGC 001040 001041 AGCCTCTGTA GGTCTGAGGA CCCGCCTGCA TGCCAGGTTC TCCGGGAGGC TTTGGACTTG GGAGCCTTTG AACGTGCCCT 001120 001121 TGAGAGGCGG ATCAGAAGGG GGCAGGTTTT ACGCATCATG TGTTGAGCCC CTCACATGCA CCCTCCAAGG ACCTGTCGGG 001200 001201 GATGGAGCAG CTTGCTGGAG ACAAGGGGCA TGGCCTCAGC GGTGGCGCCG GGGTGAGAAT GCAGGGGTTT TGCCAAGGTA 001280 001281 TCTGCACACA GCAGCCCCTG CCGTGTGGCA GGGACAGGAT GGGACCCTGG AAGGAAGAGG AGCTGGAGCT GTGCTGGAAG 001360 001361 CAGCCGGCTC CCCTCACTTA CCGCACATTG CAGGGACCGA GAGCCGGGGA CGCTGGTGTG TGACAACGCG TGGTTGTTGC 001440 001441 CACCCACCCT GGGCCCTCTG CTGCCTCTGC CGAGCCCAGG |
Predicted Small Protein
Name | NONHSAT052011_smProtein_806:910 |
Length | 35 |
Molecular weight | 3600.976 |
Aromaticity | 0.0882352941176 |
Instability index | 49.3117647059 |
Isoelectric point | 9.68414306641 |
Runs | 5 |
Runs residual | 0.0390915860015 |
Runs probability | 0.0225578519696 |
Amino acid sequence | MAAWQSGPRPDRVPGSYRSACSLSARATSGTSWC |
Secondary structure | LLLLLLLLLLLLLLLLHHHHLLLLEELLLLLLLL |
PRMN | - |
PiMo | - |