NONHSAT052280
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052280 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1507 nt |
Genomic location |
chr17-:22192652..22194158 |
Exon number |
1 |
Exons |
22192652..22194158 |
Genome context |
|
Sequence |
000001 CACTAGGGGG CGCATGCGGC TCCCGCCTGC CGGAAGGCGG AGAGGCATTC TGACAGCCCA GGCCTCCAGC ACCAGACAAG 000080
000081 CTGAGGTCCT TGTGGGTCTC CGTCTCCTTT TCTGGGGGTG AGCGGAACCT TGCCCGCCAG GCCCAGCAGC CCCTGGAGCT 000160 000161 GGAGCCTGAG GAGCTTCTGG GGCCCTGCCC TGCGCTGACC GGCCTGGCAG CGGGTCTCTG TGTGACTGGT GCGGGGAGGG 000240 000241 TACTTGGGCT CCTGGTGGCC AGCGGCACCT GCTTCCTGGG CTACTGGTTC TGGCGAGTGC TGGGGGCACT GGGGGGAGGC 000320 000321 TTCGCAGGAC TGTGGGGGCC CGGGCGGGGA GGGCCCTGCT GGGCGCTGAG GGATCCCGGG GGTCCCAGTG GATCTCCTGC 000400 000401 AAGCTTCGCC TCTGCCACCC GCCACTTGCA CTCCCGGTTT TTCTCTCCAG AGCTGGAAGA ATTGATCCCA GCCCTGTTAA 000480 000481 ACTCTGGGAC CGTTCTTCTT CGTGATACAG AAAAATCAGG AAATGGGAAT TGGATGTGCA ACAGACTTCA AGTGAATTCG 000560 000561 GATCCTTTCA CTCCGGATTC TTTCACTCCG GATTCTGTTG GGGGTATGGG GATGATTGTT GTAGTGAAGA CATGGAAGCC 000640 000641 AGTGCTCAGG AGCTGGGAGA TGAAACGTGG CCTGCTGAGA GAACTGCAGT GACTGAGAGC AAAGCGAGGT TAAGGCGCAC 000720 000721 AGCAGTTTCA GGAGCTGCAG AAAGTTGCTC TGGAGGTTTT GGTTCTGTGT TTACTGTGTG AAGAGGCAGC ATGGGTGCAT 000800 000801 GCACCACATT AGGTGATCAG GAAAGCCTTA AGCCGACTCT GCAGTGAGCA AAGAACTCTG AGAGGAGCAC AGGCTCTACT 000880 000881 GCAGTGCCTG GACGGCTTCC TCATGCAGTT CCGTATTTCT CTGTCTGGGC AGAAGATGGT CCTATGCTTA CACAGGATGA 000960 000961 ATATTGTCAT GGTGGAAATT TAGCTGATAC TGAAGTGAAT GAAAACTGCA GAATCATAAA TTACTTTAAA GAAGCAGAGT 001040 001041 TGAAGGCTCT CCTTTTGCAA GGTAGCCAGG GCTTGAGGTA TATTCATTCA ATGTCTTTGG GTCACAGGGA TACAAAATCT 001120 001121 AGTATTACTT TTACATCTCG AATCTCAATC CCAAATACTG CCTGTGAACA AGACGGAGAT GACTGGGGAG CCAACATAAA 001200 001201 TATGTTAAAC ACAGGTGATC TTGGACATGT AAGAAGGATC TTTATTCCAC AGGTGGAAAA GGGTGATAGT GGTTTTCTTG 001280 001281 CAAATGAAGC TTTACGGGAG GATTATATCC ATCTACCCAA AGTGATACTT TTTCACTTGC CCTCACAGTG GTATGTGCTG 001360 001361 CTGGTGCTGA AGCTCTTCCC AGAAATGGAG ACTAGTGCAT GAATTCACAA AGGCCAGGTT ACCTTGCTAG CACAAGTGCT 001440 001441 TTCCCGAGAG TTTACAGAGT TGATAAATAT TATGATTCTT CCGGATCCAG AGAGAAGATC TTCATCC |
Predicted Small Protein
Name | NONHSAT052280_smProtein_533:691 |
Length | 53 |
Molecular weight | 5951.9416 |
Aromaticity | 0.0769230769231 |
Instability index | 47.5192307692 |
Isoelectric point | 9.18292236328 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0259769573495 |
Amino acid sequence | MCNRLQVNSDPFTPDSFTPDSVGGMGMIVVVKTWKPVLRSWEMKRGLLRELQ |
Secondary structure | LLLEEEELLLLLLLLLLLLLLLLLEEEEEEEELLLLEELHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |