NONHSAT052338
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052338 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1388 nt |
Genomic location |
chr17-:25988579..25991673 |
Exon number |
2 |
Exons |
25988579..25989922,25991630..25991673 |
Genome context |
|
Sequence |
000001 AAGAAATCCC TCTTCATGCT GAAAGAGCTC ACCAACAAAT TCAGGCAGCC TGTGAAACGT TTGATGTCCG AAGCCAACAG 000080
000081 CACATTCAGA TCCCCAAGCT CTACACCTCC AATGTGACCT GGGGCTTGCA CCACTTCAGG CTCGTGCAGG ACTCACAGCC 000160 000161 TTTGGACCTC AGCTAAGGGA CCTGCTTCTC TGTAGCACAT GGGGCTTGTT TGTGTTGGGG TCTGAGCCCT GAGCTCATGG 000240 000241 TCAAGGAGAA CCCCAGGTCC TTCTGAACAG AGACAGCTGG CCTCGGGGCC TCCCTCTCAC TGCATGCAAG AGCCTGTTAG 000320 000321 GGCACAAGAC TCAAGGCGCT GAGGGAGGCT GTTTCAGGAG GGAGCCGCAG AAGGATGGTG GAGAGAGAAG GGGACAGcat 000400 000401 ccgccgaggg cctactgtgt gccaggcact gtccagggct cctggcccac atgggctaag tgaatctgga cactcctcct 000480 000481 gggagaaagg cacagatgga gaaattgcag ttcagggagg tgaagcaagc tgcTAGCCTG TGGCCACTTT GGGATCTGAG 000560 000561 CGCCAGCCTT CTAGCCACAA AGGCAGCAAA GGGTCATGAA GAAGGCATCA CAGAGGCGAT TCCAGGCTGT AGTGGTGAAC 000640 000641 TCTCCACTCT GCACCCCCAG GTGCTGTGCC CTGTGCCCTG ATTAGATAGT CCTGAAGGTT TCTACATGTT TAAGATATCC 000720 000721 CCAATGTCAA CGATGCTCTC CTGTGGATCC CAAGCTGTGG AGATGTCCTG GGACTTTCCA TTTTAGGTTC CTAAATTGAA 000800 000801 TTTCCCAACA CCTAGAAGCA ACCCAGCTGC CCTGTATCAG ACCAAGGACC TTTATTTGTG ATTCAGAAAC AGTGGAATAA 000880 000881 AAGGAAAGGA AAGAAAACCC CAACAGCCAC CTCAGGAGGA TGCCCCAAGG GTAGTGCTCT GGTGTCACTG ACTCAGACAT 000960 000961 GTGGGGGCTT CTGCCACCCA CGCTCAAGAG CCACTTTGCC GTTTCACCGT CTCTGTGTCC TCCACAGCCC TCAGCAGCAT 001040 001041 GCACGCCAAT AACATGTTCA CCACGAGGCT CAAATCTCAG CAGAAGCTAC AGAGTCCAAC ATCCAGGTAA GGGAAAGTGC 001120 001121 AGGGCTTCTC GGGTGATGCT CTACTGATTT TATTTTAATG AATGAAAGAC CAGAAGAAGT CAGTCTTTGA AGGGAGAGGA 001200 001201 GAGGAGCATC TGCTGGCATT AGCAGCCATG CCATCGGTAG GACTGGCTCA CCTGGTAACC TGTGGCCACC TGTGCTTTTA 001280 001281 CATCTACTCT TGGTTAACCA CGGGCCACTT TTCCAGCTTG GACTCTAAGC GTCTGTTCCA CTTCCTCTCC TTCCTCATTG 001360 001361 AACTCTTTCA CTAAAAGGAG AGTGCAAG |
Predicted Small Protein
Name | NONHSAT052338_smProtein_374:535 |
Length | 54 |
Molecular weight | 5480.9091 |
Aromaticity | 0.0188679245283 |
Instability index | 43.5056603774 |
Isoelectric point | 5.11456298828 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0389899703625 |
Amino acid sequence | MVEREGDSIRRGPTVCQALSRAPGPHGLSESGHSSWEKGTDGEIAVQGGEASC |
Secondary structure | LEELLLLLLLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEELLEEEL |
PRMN | - |
PiMo | - |