NONHSAT053295

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT053295

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2319 nt

Genomic location

chr17-:36202573..36233931

Exon number

5

Exons

36202573..36204338,36204746..36205003,36214022..36214127,36214770..36214848,36233822..36233931

Genome context

Sequence
000001 GCTGGGCCCA TGAGGTGTGT GCTCTGTATA TTCCGGAGGT ACAATTTGCC AATGATTCCA CAATGGAACC AATTGTTTTA 000080
000081 CAGTCTGTTC CACATGATCA TTGTAATAAG GTTGAGACTG AGCTAAAGTT AATCTGCGGC GATGTTCTGG ATGCACTGGA 000160
000161 CAAACACCTC ATTCCAGCAG CTACCACTGG AAAGGGGTCT ACCACAGGTA TCTGGCAGAA TTTGCCACAG GAAATGACAG 000240
000241 GAAGGAGGTG GCAGAGAACA GCTTGGTGGC TTACAAAGCT GCTAGTGATA TTGCAACGGG TTTCTCCATG TTGGCCAGGC 000320
000321 TGGGCTCGAA CTCCTGGTTT CAAGTGAACC TCCCAACTTG GCTTCCCAAA GTGCTGAGAT TACAGGCGTG AGCCACCATC 000400
000401 CCCGCCCCCT CAAAATCTGT TAGGACGACA GTCTCGCCAA GGCAATGCAG TCGCAATATG CCGTTTCCAT TGCAATCACA 000480
000481 ATATGACATT TCCATTTACT TTGGATTATA CGTCATTATG AATATTAACA AGACTTAAAA AGGACACCTT CGGATTTCCT 000560
000561 GTCTTTGTGG GCTGATGGAC TAGAGGAAAG ATGCCTGTTG ACGGTCAAAG GCAGAGCCTC TTCGGCAGCT TCTTAAAGCG 000640
000641 CCTTCTTTAA CAGAGAAACA ATCTGCATGG GGTCTAGAAC GGTTCTGAAA TCCTGCTGAA GGTTTCGAAA CTTCCTGGGG 000720
000721 GGGGTCTCCT GCCAGAGCGC CTACGCTGCC TCTGGGCTGG CTGGCCAGTG AGCCCCGTCT CACAGCCTGA CAGTCCCCAC 000800
000801 ATCAGCCCGG ACCGTCTTTC GGGACCAGCC CCATTTGCAC AGCCTGAGCT GTAGAGGGCC CTGGAGTTCG GAGTTCTTGT 000880
000881 CCCAACTGTG CCCCTGCAGG CCTGTTCCAC CCACTGAGGC TCAGTTTCCC CATGTGCCTA ATGAGGAAGT CATGCTAGGT 000960
000961 GGGGCTTACA GCCTCTTGCA GCTTTGCCAT TGATCACTTC CGTGTCTTCA GAGAGGCTGC CAAGTCTCCT CTGAATGAAG 001040
001041 TTCCCCAAAA AGCAAACGTA AGAAAATACA CAGAGCTTAC CCAGACACCA GGCCCTTTAG AAATAGACCA TTTCTTACCT 001120
001121 TAGGCCCCCA GAAGGTCCTC ATTCTAGCTT TGTGGAGAAA AGAAGAGTCT TTGCCTCAGC CCCCAGAGGT TGGGGTGGGG 001200
001201 TGGCTGAATT TTGAGGCTGG GATTGGCAAC TCTGGTGAAG CCCAAAGTGA CACGGATGGT TTCAAAGCCA CCTAGAGGAT 001280
001281 AAGGTGTCAG GACAGTGACA AGACCCCAGG TCCCTATCAC ACACCAGAGC TCACTGAGCC TCCACCTGGG GTCTCTGCTG 001360
001361 AATCTCTGAC AGGCTAGGAG AGAAGGGACT GGGGTTACTG ACCCCCAGAA AGTCAGAGAA AGTGGCAGTT GGAGGACCTG 001440
001441 GGTTTGAGTC CTGGATCACC CCTTCCCCGC CTTGGCAAAC TACTCAGACT CTGGAAACCT GTTTCACCTG TAAGATGGGG 001520
001521 ATGACAATCA AACCCACCTT GCAGGGCCGT GAAGATGCTT AAGACAAGTG CATGCAAAAA CTTTCACACA CACAAAGCCT 001600
001601 TCCTAAAGAT GGGGAGACAA GGCCTCATGA GCAGCAGGTG GCCAGGCACT ATGTGGGGGC TGGAGTCCTG TTTTCCCTTC 001680
001681 AACCTGGGAA AGGACTGATG GGCACTTAGT AGGTTTTGAA TCATGACCCT GGACCTCAGG TGGCGGTATG CTTTGTGTCT 001760
001761 GCAGCAGAAG GCCCCAGCCT CGTGCCTGTG AGTCCCACTA CCGATGTTGA AGGGGTGGAC AGCAGGCGGG TGAGCCCCAG 001840
001841 GCTGGCAGCT AGCAAGACCT CTCACGTGTG AGCCCAGCAC CCCACTTCCC CTGAAATGTG ATGTCCAGTG CTCCAGGCTG 001920
001921 GGGGCCGTGG ATCCTGATTC CAGCTGTGTG AGGGCTGGAA GGCCCTGGGC AGGTCACCTG ACCTCTCTGG GCCTATTTCC 002000
002001 ATCACACACT TGAGGGGCTG AGCACACTGG ACTCTATAGC TGTACAACTC CTTGGCTCTG CTTTTGTTCC TGAGGGCCCC 002080
002081 TTAGTAGGCA GGGAAAGTGA GGGCCTCAGG GCTGGGCCCC AAGACTCAGA TGCTCTCAAC CCCTTCCTGG AGTGCCTAAC 002160
002161 TCAGGGGAGC AGACAGGCCC AGCAGGCAGG GTGCCTCTCT TGCTCAACTC CTGGAGCTAT ATGTTTTTTT AGCTTACTAT 002240
002241 TTTACTTAAG AATAGATCAT GAGCATTGAC TATTCTAAAA CATGACTTTC ATGACTATAT AAAAGTCCAT TGTATCAAT
[back to top]

Predicted Small Protein

Name NONHSAT053295_smProtein_62:346
Length 95
Molecular weight 10672.3358
Aromaticity 0.0744680851064
Instability index 46.970212766
Isoelectric point 8.98699951172
Runs 11
Runs residual 0.0117946345976
Runs probability 0.0249152896211
Amino acid sequence MEPIVLQSVPHDHCNKVETELKLICGDVLDALDKHLIPAATTGKGSTTGIWQNLPQEMTG
RRWQRTAWWLTKLLVILQRVSPCWPGWARTPGFK
Secondary structure LLLEEEELLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLHHHLLLLHHHLL
LHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLL
PRMN -
PiMo -