NONHSAT053436
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053436 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1524 nt |
Genomic location |
chr17+:37403432..37404955 |
Exon number |
1 |
Exons |
37403432..37404955 |
Genome context |
|
Sequence |
000001 ttgggattac aggagcctgc caccatgccc agctaatttt tgtagttttt agtagagatg gggtttcacc atcttggcca 000080
000081 ggctggtctt gaactcctga cctcgtgatc cacccctcgg cctcccaaag tgctgggatt acaggcatga gccaccacac 000160 000161 ccagccAACT TTTCCCTCTT TACTTCTCCT CCCCCCACCC CATAGCCATC TTCCTGGCAC CCCTGGTTTC CTGTGGGCAC 000240 000241 ATCTCTGGAC TCCCTTCCCC TGCTGACCCC TGCCTCTGTG TTGCCCATGC CCCCAGACTT TTATCAAGAG ATCTCTCTGG 000320 000321 ATGAACTCAG TGCTGTAGAG CTGATGGGGA AACTGGCTGA GCTCTGGCCA TCCCAGCCAA TCAGATCCAT CACCTTTTCC 000400 000401 ACCAGGGCAC CGGGGGCATC TTCATTCTCC TCAGTGACCA GATAAAGGGC AGCCATTTCC TGTCGCAAAT CCCCACGGAG 000480 000481 GCCTCGCTAA CACTTCTGCC TCAGATTAAG CTTTCTTTTC CATGGCATGG CTTGTTCTCT TTGGCTCCAA TAACAAAATT 000560 000561 GCCTTTGTGC CCGCTTCACT CTTACAGGTG GTCCAGAATT TTAAGGACGA ATCATACTTT GTGGCTGTGG TGAAAAAAGG 000640 000641 GATTTTAGAG GCAGAGGAGT GTGCCTGGCT GGCCCTATAA AGGGGGATAA GAGTGTGCTG AGCATATATT CCGTCTCCTA 000720 000721 AATGAGACTA AAAGGCTCTT TGGGggccag gcgcagtggc tcatgcctgt aatcccagca ctttgggagg ctgaggcagg 000800 000801 tggatcactt gaggacagga attcaaaacc agcctggcca acatggcaaa accccatctc tataaaaaat acaaaaaact 000880 000881 acccgggcgt gctggcacgt gcccgtggtc ccagctactt gggaggctga ggcaggagaa tcccttgaac ccaggaggca 000960 000961 gaggttgcag tgaaccgaga ttgccccact gcactccagc ctgggtgaca gagcgagtct gtctcaaacg tctcaaaaac 001040 001041 aaacaaacaa acaaaaaaCC TCTTTGAAGG GGATTAAGGG GATGTGTCCC AATTAACTAG CAAACACCTG TGAATGCCAG 001120 001121 CTTTGTGTCA AGGGGAGAGG GATTTGTATA GCTAAAAGAT ATTTATTGCT TAGGAAAAAC ATGACTGAAT AAATGCATCC 001200 001201 TCATTAAATA AAAAATGCTC CAGTTTCTGT TGTCAGGGAG TTTATTAGAG GGAAAGGTAA GGCCCCCACT TTTCTCCACC 001280 001281 TGCCCCTGGC ATGATACAAG GCAGAAGGGC AGGTGCTTCC TGGACATCAT CTGGCATAGG GCACCTCTGA CTAGTCTGCT 001360 001361 TGGCATCTGG TTATTCAGAT GTTTGCCTTC CACCCCTCCA CATGCCAGAG CTGGTCAGCT TGGCTTATGT ACACAAGGGG 001440 001441 GTAGGAAGAG GTAGATGTGA AGTCGGGTTT TAAGACACGT GTggccgggc gtggtggctc acacctgtaa ccccagcact 001520 001521 ttgg |
Predicted Small Protein
Name | NONHSAT053436_smProtein_1214:1453 |
Length | 80 |
Molecular weight | 8939.5005 |
Aromaticity | 0.0886075949367 |
Instability index | 44.8392405063 |
Isoelectric point | 10.7991333008 |
Runs | 9 |
Runs residual | 0.0263568579851 |
Runs probability | 0.043494474867 |
Amino acid sequence | MLQFLLSGSLLEGKVRPPLFSTCPWHDTRQKGRCFLDIIWHRAPLTSLLGIWLFRCLPST PPHARAGQLGLCTQGGRKR |
Secondary structure | LLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLHHHHHHHHHHHHLLLL LHHHLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |