NONHSAT053677
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053677 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2564 nt |
Genomic location |
chr17-:40166608..40169171 |
Exon number |
1 |
Exons |
40166608..40169171 |
Genome context |
|
Sequence |
000001 CCGCTTCCGC CTGGCGTAGG AGCTGAGGCA TGGCCTTGTT CTCCAGCTGA GAGGACGATC GTCCTTATAG GAGAGGCCGA 000080
000081 GTCTCCGAGG GCAATTTCAG AGGTCTGGTG CGAGGTGGGG GAAGCGGCGC GGCGTCGATG ACGACTTCCT TACATCGCCC 000160 000161 CCGACCCCCG CGTTCTCTTG TTAACTTCTG TGCATTGTTG CCTGTCTGCA CTTTCCGTCT CCAAAACCTT TGCTCTCCTC 000240 000241 ACCCCGTTTT CCCTTGTAAT TATACCCCAG CGATCACTAG TCTGGGTTCG AAGTGATTGT GTGTCTCCAT AATTGACCTG 000320 000321 GTTGCCCCCG GTTATCCCAG AAGTCAAAGA TGACAGAGAA AAAAAGGAAG AGCGAGGGGC TTATCTCGTG TTCTCTACGT 000400 000401 CAGACTCCTC TTCCCCTGTC CTTCCTGGGT GATCTTTATC CTTCCCAGCA CTGTTCTTTC TTAAGTTAAG CACCAAGGAA 000480 000481 GAGGGCAACT GCTTGGGCGC TGTTGGCACT CCGAAGCAGC CGCAGTGGTT CGAGATTGCC AGTCGGACTA GCCAAGGGAG 000560 000561 CTGCTGAGTG AGTGGTTTTC GAGAACGCTC TAGATTCTGG CAACAGTTAG GCCAGATTAT TGGAAGTGGG GTTGGAACAG 000640 000641 AGTTGTGGGT AGTCATACTT GTTCTAATCC TAAAGCAGAA TTGACAAGAA GGTTCTAGAA GTTTGGAGCC CTTTCCTTAT 000720 000721 CAGCTGCGGG TTAGTCTGAC CCTTTTGTTC AAGATATCTA CAGTGCCCTC AGTCTCTTTG CAACATACTT TATATCTTCA 000800 000801 TACCAAGCCC GTTGTGTCTT CAGGCTGGGT AATTTGAGGC GGTGATGTAG AATTAGTTCA TGAGATCTGA AATCAGGATT 000880 000881 CTGAGATTTT TACTATCTAA TGAGTTCGAA ATATAAGAAG TACTCGGACG CAATGAATAG TTATCAAGCT TGAGGGTGGT 000960 000961 TACCACAGCC AGATCTCAAG TTCCTGATCT GCTGGGAGCT GAGGGGCCTG ACAAAGTGTA ATAGGCCCCT GGGATATCAG 001040 001041 AGAAGCCAGG ACACCAGAGT CCAGTCTCTG TTCTTAATTT TGAGCTTTCA TGTTGTTCCT ACTTCTTCCT AGATATTTAA 001120 001121 AGCTAAGCAT CATCAACCCT TATACATCAT TAAAGAGCTG CACAATGGGA AACAAAATTC CTCCCAGTGC AGACGGAGCT 001200 001201 TAAATTAATT GTAGAGATTT ACTTGTATTT GGAAAGAGTT CAGTGGTTCT TTATACTGTA AATAGGGATT TGGCCACAGG 001280 001281 ttatttattt tttatttttt gagacggaat ctcgctctgt cgcccaggct ggagtgtagt ggcgcgacct cagctcactg 001360 001361 caagctccgc ctcctgagtt cacaccattc tcctgcctca gcctcaccag ttgctgggac tacacgtgcc caccaccaca 001440 001441 tccggctaat tgttgttttt tttttgtatt tttagtagag atggggtttc accctgttag ccacgatggt ctcgatctcc 001520 001521 tgacctcgtg atccgcccac ctcggcctcc caaagtgctg ggattacagg cgtgagctac tgtgccgggc TGGCCATAGG 001600 001601 TAATTTTAAA AACTCACCCT ACTCATTGTA AATCTCTGAT GTAGAGTGTC CCTATTTTGG ACTTCATTTC ATAGCCTCCT 001680 001681 ATCTTAAGCA AATACATTTC TTCAATCACA GCCTTAGAGG ATAGTCTATC ATAAAATTGG AGTAAATGAA CCTGAAGACA 001760 001761 TATAATAAAA TAGGTTATGC TGTAATGTGA CCACATCACA CAAAACATGG TATTTGATAG CAGTACAACA AAATAAGGTA 001840 001841 AACTAcctta tttcatggaa tttaagtgtc attaggctgg gtgcagtagc tcacacctgt aatcccagca ctttgggagg 001920 001921 ccgaggcagg tgggtcagct gaggtcggga gtttgaaacc agcatggcca acatggcaga accctgtctc tactaaaaat 002000 002001 acaaaaatta gcggggcgtg gtggcacaca catgtaatcc cagttacacg ggaggctgag gcaggagaat cgcttgaact 002080 002081 caggaggtgg aggttgcagt gagctgagat cgggccattg cactccagcc tgggtgacaa agtgagattc catctcaaaa 002160 002161 aaaagtcatt gattgcagaa tgcaaattat tttatctgtc actaagaaaa tgtaactgta aattaaacat gacaacatgc 002240 002241 attattCCTG TAGTTCAAAT AGTgacagaa aaaaattaat taaaaaaaga aaaaagactg ggcgtggtgg ctcacacctg 002320 002321 taatcccagc actttgggag gccaaggcgg gtggattacc tgaggtcagg agttcgaaac cagcctgact aatacggtga 002400 002401 aaccccatct actaaaaata caaaaattag ccaggtgggg tgatgctgta atcccagcta gtcaggaggc tgaggcagag 002480 002481 gttgtggtga ggggagatca tgccattgca ctccagcctg ggcaacaaga gcaaaactcc gtctcaaaaa aaaaaaaatc 002560 002561 aatt |
Predicted Small Protein
Name | NONHSAT053677_smProtein_137:295 |
Length | 53 |
Molecular weight | 5783.7967 |
Aromaticity | 0.0769230769231 |
Instability index | 61.2692307692 |
Isoelectric point | 9.69158935547 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0229052581994 |
Amino acid sequence | MTTSLHRPRPPRSLVNFCALLPVCTFRLQNLCSPHPVFPCNYTPAITSLGSK |
Secondary structure | LLLLLLLLLLLLHHHLHHHHLLLLLEELLLLLLLLLLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |