NONHSAT053988
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053988 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
933 nt |
Genomic location |
chr17-:42980908..42982722 |
Exon number |
2 |
Exons |
42980908..42980927,42981810..42982722 |
Genome context |
|
Sequence |
000001 AATCTGAGTT CACACTTTCC TTCTCTGACC TAAATGTGAA GTCAGGAAAC ACATGTGCCC TACTTCCATC CTGAGCTCAG 000080
000081 TCCCCAATCT CCCACCAGCC TCAGGCCCCT CCACTTCTCA GATCAGGTCC CAGACCTGCC CATGAAAATG GGGAGCAGGC 000160 000161 TGTAACAGAT TTGTCCACAT GTTCCTACCA CCTGTCCCAA CCCAGGGTAC CCACCCAGAG ACATCTGGTA TCATTTAACA 000240 000241 AACACATTGA AGGACAACTG GTCTTCAGAG CTGAAGAGAG CTCCTAGGGG GAGAAGCTGG GACAACAGTG AAATAAGTAG 000320 000321 CAGCAGCAAC GACAGAAGTG AATGGTGACA AAGACTGCTG TGATGAGCAG GTAGCCTATC AGGGTGAGCT CCACAGCCGA 000400 000401 GCGAGTCTCA GGATCTGAGA ACGAGGCTGG GTAGTGCCCA TGAGATGTCA CACCCAGCCG GAAGCCAGCA ACTAGCACAC 000480 000481 CCTGCCTCCA GCAATAGTAG ATGCCCCGGT CATCCAGCTG GGTGAAGCGG ATGTGGAGCT GGTTGCCGTG GTCAATGAAC 000560 000561 ACCCTCATGG ACCTGTTGAC ACCCTTCAGG TACTGTGTGC GGTAGAGGTG CTGGCGGTCT TTGTCCCAGG CCACTGCATG 000640 000641 CTCTGGCCGG GCCCCAGGAC AGGAGATGAT GAGTCCATGG CCCAGTCTCT GCTGGTGGAA CTGAATGGGC ACCTGGGGCA 000720 000721 CCCAGGGCCG GCTGCCCACT TTGGACACAT AGTTAATGAT GGCCAGCACG CCCTCCCGGA TGGTCTTTGT CTTCTCACAG 000800 000801 GGTACTAAGC AGCTCCGAAC CAGCACCTCA GGCGTGTGGT CCCTGGCCTT GGTCCGCAGC TTCCTTGGCA CAGCCCTTGA 000880 000881 GCCACAAGAC ACCACATCGG GCACGGCCTT GAGAACACTG GCGCTCACCC AAG |
Predicted Small Protein
Name | NONHSAT053988_smProtein_500:604 |
Length | 35 |
Molecular weight | 4263.0662 |
Aromaticity | 0.176470588235 |
Instability index | 58.0882352941 |
Isoelectric point | 10.8474731445 |
Runs | 7 |
Runs residual | 0.0197319434103 |
Runs probability | 0.0275569687334 |
Amino acid sequence | MPRSSSWVKRMWSWLPWSMNTLMDLLTPFRYCVR |
Secondary structure | LLLLHHHHHHHHHHLHHHHHHHHHHLLLLLLEEL |
PRMN | - |
PiMo | - |