NONHSAT054184
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054184 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1085 nt |
Genomic location |
chr17-:43982606..43988925 |
Exon number |
3 |
Exons |
43982606..43982748,43985633..43985749,43988101..43988925 |
Genome context |
|
Sequence |
000001 cggactcctg gcctcaagtg atcctcccat cttggcctcc taaagtgctg ggattccagg cgtgagccac tgcacctggc 000080
000081 cCTGtttttg tcatttgaga caggttctcg ctatatcgcc caggctagtt tcaaactcct gggctcaaga gatcctcctg 000160 000161 cctcagattc cccagcagct gggactacag gcgcagccac TCACCAGTGT GGCCTTAGGG TTTTTGTAGT CAATATTGAA 000240 000241 CTCACCCACT CATCCattta ttcactcgtg aatcaattac tgagtgctta ttctgtgcca tgcgctatgc ccggcacaga 000320 000321 agacacaaag atgaataaag catctccctg cGATGGGCGA GTGAGGGAGG CTGGATCCCT GGGGAAGCCC AAAGAGTGGA 000400 000401 ATTAGACAAC ATTGTGGAAA TTAAACACAA ATAACGGGCA CTAGTGATGT GAAGGCAGCA TGATTCCATT TGATGTGAAA 000480 000481 CTAGAAGGAT AGAAACTCAT TTACCAATTA TCTTTAAATT CTAACAACTA TTTTTAGCCT TTAGATGTGG AAAAAATAAC 000560 000561 TTGTATTACA GGATGTGTTA CCTAACTGTC TGCTTTAACA TGATGGTGGT TTTCCTCCTT CTGTCTTCTA GATCCCTGGA 000640 000641 AATGTGGGTG CATATGAGGC TCCCTCTGCC TCCTCCCACA GCCATATGAG CTGCCGCCTC CTAGGAGAAC CTGGCAGGGC 000720 000721 TGGCAGCACC CCCAGCTCCC CAGTTCAGCC CAGAAGGGGG CTGCCTGGAC TCCAAGATTT CTCCCTTCAC CCGCGGCTGC 000800 000801 CTCCTGCCCC CATGACTACA GTGTGATGCT GTCTGGGAAG CTGAATGTCA TCTTCCCTGG GCTTACCTGC CAGGCTCCTC 000880 000881 TCATCCACAT CTTCCAGCCT CTAGCCACAT GGACCCCTCC GGAAAGCATG TGTGTGTGGG GGGGAACAGA GTGCAGCCGC 000960 000961 CACTGGCCTT TTCTCAGGCA CAGTTGAGAT GCTAAGAAGG GAGGAACTTC ACCACTaaag gaagaactga acccggtgga 001040 001041 gagaagccca ggaggcaagt tatccctata ggattatcca ggaaa |
Predicted Small Protein
Name | NONHSAT054184_smProtein_572:688 |
Length | 39 |
Molecular weight | 4441.5023 |
Aromaticity | 0.105263157895 |
Instability index | 46.7342105263 |
Isoelectric point | 7.84674072266 |
Runs | 6 |
Runs residual | 0.014716066482 |
Runs probability | 0.0815079785668 |
Amino acid sequence | MCYLTVCFNMMVVFLLLSSRSLEMWVHMRLPLPPPTAI |
Secondary structure | LEEEEEHHHHHHHHHHHLLLLHHHHHHHHLLLLLLLLL |
PRMN | LLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | i????????????????????????????????????? |