NONHSAT054308
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT054308 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
804 nt |
Genomic location |
chr17-:45532734..45567584 |
Exon number |
4 |
Exons |
45532734..45533275,45534050..45534159,45560358..45560456,45567532..45567584 |
Genome context |
|
Sequence |
000001 GAACTGATAG AGAGAACTGA ACGAATGAAG AAGACTATGG CATCACAAGT GTCAATCCGG AGGATAAAAG ACTATGATGC 000080
000081 CAACTTTAAA ATAAAGGACT TCCCTGAAAA AGCTAAGGAT ATCTTTATTG AAGCTCACCT TTGTCTAAAT AAGTTGGGCC 000160 000161 CATGAGATGT GTGCTCTGTA TATTCCGGAG GTACAATTTG CCAGTGTTTC CACAATGGAA CCAATTGTTT TACAGTCTGT 000240 000241 TCCACATGAT CATTGTAATA AGGTTTCACC ATTACCCAAT GTGCCTTTAA ATACAGTTTT ACCACTTAAT TGAAGGTACA 000320 000321 CATTCCAACT GTGGAAGAAA TTGCAGCCAG CTTTAAGATT TTAAATGTTT TTGTGCaaaa aaacttttta ttatgtaatt 000400 000401 aatatttatt ttattttatt ttattttact ttttatttat ttattttttt tgagacagag tctcactctg tcacccaggc 000480 000481 tggaatgcag tggcatgatc tcggctcaca gcaacctctg cctcccgggt tcaagcaatt ctcctgcctt agcctcctga 000560 000561 gtagctggga ttacaggtgc ccactatcac gcccgactaa tttttctatt ttttagtaga gacggggttt TTTCTGTGTA 000640 000641 TTTTTGCTTA TAGTATATAC TTACGAAAAA GTTGAATCGT TTTGCTTATA TTTTTTGTTT GCTTTTGAAA ATTACACAGC 000720 000721 ATCTTTTGTG TGTCAATAAA TTGTGTTTCT GCTGTATTTT TAATAGATAC TTGGTCTGTA ATACAGAATA TCATGAGATT 000800 000801 CAAC |
Predicted Small Protein
Name | NONHSAT054308_smProtein_161:289 |
Length | 43 |
Molecular weight | 5347.4891 |
Aromaticity | 0.214285714286 |
Instability index | 59.4311904762 |
Isoelectric point | 9.49664306641 |
Runs | 8 |
Runs residual | 0.0143158529234 |
Runs probability | 0.0399553965731 |
Amino acid sequence | MRCVLCIFRRYNLPVFPQWNQLFYSLFHMIIVIRFHHYPMCL |
Secondary structure | LEEEEEEEELLLLLLLLHHHHHHHHHHHHHEEELLEELLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |