NONHSAT056078
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056078 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1518 nt |
Genomic location |
chr17-:74730229..74732637 |
Exon number |
3 |
Exons |
74730229..74731240,74731854..74731957,74732236..74732637 |
Genome context |
|
Sequence |
000001 GAGATAATgg cggcctgggc gggagcgcgc gggcggggcc ggccccgcTG CCTGGAATTA ACCCCGCTGT GCTTGCTCGT 000080
000081 CCCGCCCGCA GCCCTAGGCG GCGTCGCCGC AGCCGATCCC GGAGTCGGAG TCGTTCCAGG TCTCGCAGCC GATCTCGCTA 000160 000161 CAGCCGCTCG AAGTCTCGGT CCCGCACTCG TTCTCGATCT CGGTCGACCT CCAAGTCCAG ATCCGCACGA AGGTCCAAGT 000240 000241 CCAAGTCCTC GTCGGTCTCC AGATCTCGTT CGCGGTCCAG GTCCCGGTCT CGGTCCAGGA GTCCTCCCCC AGTGTCCAAG 000320 000321 AGGGAATCCA AATCCAGGTC GCGATCGAAG AGTCCCCCCA AGTCTCCTGA AGAGGAAGGA GCGGTGTCCT CTTAAGAAAA 000400 000401 TGCTGCGGTC TCCTGTTTGA TAAAAGAATA TTGGCCAGTA TTGCAGATTT TAACTGATTT GGCTGATCCT CCAGGGACCA 000480 000481 GTTTCTGTGG GCGTGTATTG GAGCAGATGT ATCGGCAAGC AGTGTAAACG GAGGACTTGG GGAAAAAGGA CCACATAGTC 000560 000561 CATCGAAGAA GAGTCCTTGG AACAAGCAAC TGGCTATTGA AAAGGTTATT TTGTAACATT TGTCTAACTT TTTACTTGTT 000640 000641 TAAGCTTTGC CTCAGTTGGC AAACTTCATT TTATGTGCCA TTTTGTTGCT GTTATTCAAA TTTCTTGTAA TTTAGTGAGG 000720 000721 TGAACGACTT CAGATTTCAT TATTGGATTT GGATATTTGA GGTAAAATTT CATTTTGTTA TATAGTGCTG ACTTTTTTTG 000800 000801 TTTGAAATTA AACAGATTGG TAACCTAATT TGTGGCCTCC TGACTTTTAA GGAAAACGTG TGCAGCCATT ACACACAGCC 000880 000881 TAAAGCTGTC AAGAGATTGA CTCAGCATTG CCTTCATTCC TTAAAATTAA AAACCTACAA AAGTTGGTGT AAATTTGTAT 000960 000961 ATGTTATTTA CCTTCAGATC TAAATGGTAA TCTGAACCCA AATTTGTATA AAGACTTTTC AGGTGAAAAG ACTTGATTTT 001040 001041 TTGAAAGGAT TGTTTATCAA ACACAATTCT AATCTCTTCT CTTATGTATT TTTGTGCACT AGGCGCAGTT GTGTAGCAGT 001120 001121 TGAGTAATGC TGGTTAGCTG TTAAGGTGGC GTGTTGCAGT GCAGAGTGCT TGGCTGTTTC CTGTTTTCTC CCGATTGCTC 001200 001201 CTGTGTAAAG ATGCCTTGTC GTGCAGAAAC AAATGGCTGT CCAGTTTATT AAAATGCCTG ACAACTGCAC TTCCAGTCAC 001280 001281 CCGGGCCTTG CATATAAATA ACGGAGCATA CAGTGAGCAC ATCTAGCTGA TGATAAATAC ACCTTTTTTT CCCTCTTCCC 001360 001361 CCTAAAAATG GTAAATCTGA TCATATCTAC ATGTATGAAC TTAACATGGA AAATGTTAAG GAAGCAAATG GTTGTAACTT 001440 001441 TGTAAGTACT TATAACATGG TGTATCTTTT TGCTTATGAA TATTCTGTAT TATAACCATT GTTTCTGTAG TTTAATTA |
Predicted Small Protein
Name | NONHSAT056078_smProtein_1367:1444 |
Length | 26 |
Molecular weight | 2967.7444 |
Aromaticity | 0.04 |
Instability index | 43.432 |
Isoelectric point | 10.0604858398 |
Runs | 4 |
Runs residual | 0.0483018867925 |
Runs probability | 0.00103780250839 |
Amino acid sequence | MVNLIISTCMNLTWKMLRKQMVVTL |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHEEL |
PRMN | - |
PiMo | - |