NONHSAT056447
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT056447 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5032 nt |
Genomic location |
chr17+:79140319..79145350 |
Exon number |
1 |
Exons |
79140319..79145350 |
Genome context |
|
Sequence |
000001 ggAAGTCGTG AATGGTAAGT CGTGAGTGGG TACGGAGGGA ACGCCGGGGT GGGGGAGGGG GTACTCCTAG GTGGAAAGGT 000080
000081 TCAGGGAGAC AGGTGGGGGA ACCCGGGAGC ACACCCAGGG CGGGTCTTGG TGCTCAGGGG CCCTCGCCTC ACTTGCAGGT 000160 000161 TTCGAGGCGG CTGGCAGCCG CCCCCCCACC CCATGCCCTT TGGGTGGCAC CTGTGCTGGT GGAGTGGGGG TGGCTGGCTT 000240 000241 TGCACACAGG CCTGCTCCTG TACCGTGCTG CGACAGCCAT GAAGGAAGAA CCTGGCTGAG TCTCCACCTG CCGTGGACTG 000320 000321 TACCAGGTGC TTAGGGCAGC AGGTTGGCCT GGGCGCTGAG GGGCCATCCC TTCCCCTATG TTTCTCCCAG GATCCCCCAT 000400 000401 CCCCGCCCAA AGTGCCACCT TGCAGGGTTG GGGCGGGGCA GGGTCCCCCC AGCCTGCCCC CGTGGGAGTC GGGAGAGTTA 000480 000481 AAGTTCAGTG GAAgctggtc ccagtggctc atgcctgtaa tcccagcact ttgggaggcc agggcaggcg ggtggcttgt 000560 000561 gctcaggggt tccagaccag cctgggcaac atagcaagac actttctcta caaaaattag aaaaatgagc caggcatggt 000640 000641 ggcgctcacc tgtagtctca gctacttggg aggctgaggt gggaggatca cttgagcctg ggagttagag gccgcagtga 000720 000721 gccaagatgg caccactgca ctccagcccg ggtgacaaca agatcttgtc tcaaaaaaaG TGTCCTGGAG ACTTGCAGTT 000800 000801 GAGTTTGATG CACCCtcatc cactcattca ttcactcact cattcattca ctcactcatt cattcactca ctcattcTGG 000880 000881 GACCAGATGG CTAAGCCCCT TGGCAAGGCC CAGTTGGGGT TGGGGGCTGT GGAGCAGGTG AGAGGCGCCC ACTCCAACAG 000960 000961 GGCTCTTAGG ACTTTAGGGA GAGAAAGGAG CCTGTTCCCG GCAGAGGGAC CTGCAGAGAC CAGGACAGGA TGCTTGGGCC 001040 001041 ACGGGGCAGA TGGGCACCAG GACCCACCCT TCTTTTCCTA AGGGGGTCCC TCATGTAGGA AGTTTCCTCC TAACAGGCAA 001120 001121 AGCAAGGGGC CTCCACCCTG TGCCCTCAGA CCTTAGGGGT CCCTGGCTGT AGGAGACAAG ACACCAACTG CACCTGGGGC 001200 001201 AGAAGGAGAC AGGGCACCCA GAGCCTTCTT CCTGGCCCTG ATCATGTGGC CAGCCAAGGT TCTAAGGGGC GCTGCCGCCA 001280 001281 GGCTGCCGTT GCAGGTAAAG AAGCCGCGTG GGTAGAGTGG CTGAAGGGGG CCTTGCCCGC AGGAGGCACT CAGAGGCCTT 001360 001361 GGGCCACCTC GTTCAGTCTG TGTCTTCAGG GAGCCCAGAG GGCTGGGAGG ATCAGTGCCC ACCCAGTGGC AGGGATGGTT 001440 001441 GGTGCCAGCA GGCTGTGATC CTGGAGTGCT CCAGTGTGAG GGACAGAGGG TATGGCATAC CCTCATGAGT CTCCACTCTG 001520 001521 GGTCCCCTGT CAGGGCCTCC CCTCCCCAGC TCAGGAGGGA GTGCCCTCCT CTGCCCAGCC TGGAAGGTGC CCTAGACACC 001600 001601 TGGACCTAGG CAGGGGGAGG TGGCCAGTGG CCGTGGGTGG TTGCTGGTTG GCATGTTGGG GAGAGTTTCT GTCCAGAACT 001680 001681 TCCATGCCCT CAGTGTCCCT GCCTTGATGA CCAGGGCCAG AAACAGCTTG CTGTGACCAG GGGCTGGCTC CTCTCAGTTT 001760 001761 TGCCTGTGAA CACACACATG TACACTTGTG GCTGGGCCAC AGCTCAGGGG CTTCAAGCTG TGGATCTTCT TGGGGCTCCA 001840 001841 GGAAGGACAG GGGAGGAGCT GCCCCTGGGC TCCAAGCCAG CACTCCCACC CTACGTAACC AGAGCGACAC CCCTTCTCCA 001920 001921 GGAAGCACAG GGCCCTCTGA GATTTCGCTG GAACCAGGAG TTCAGATGCT TCCACTGACC GTGACCCTAG TGGGGCCCCC 002000 002001 CAGGTGCTGG CTTTTGCCCA CGCTGGGACA GGATCAGTGA GCACCTCTGG GTAAGAGGTC CCTGAAGACA TAGCTGTCTG 002080 002081 CTATCCCCCG GCCTGGGGGA AGGCATGATC TCCGCCCCTG GGACTCTCTA GAGCCCAGAA GGAGCTGACC GAGGAGCCCA 002160 002161 GATTGGCTGG GAGAGTGTCG GTGCAGAAGC ATTGCCCGTC GAAGAGGAAA AAGGCCAAGA ACCCAGCAGG AAGCCCAGGT 002240 002241 GTGGTGGAAA AGAGGGGGCA GGGGCAGGAG AGAGCCTGGG GGTCTGGGGA TTAGAGACCA gagtgaggaa cgcacctcag 002320 002321 gagcaaagtt tagggggcac ccaaaaactc agcagttatg cccatccaca gataaaccat caacaggatg tgatctgtcc 002400 002401 atacgatgca atggtattgg tccatacaca ggaccaaagc tctgaccaca ctataacatg catgacacat gctaccacat 002480 002481 ggatgacaca tgaaaatatg ctcagtgaaa gacacagaag gccacagagt gtgtgattcc acttgtatga aatgtctgga 002560 002561 acagacaaat ccacgggaca gagcacaggt ggagggccag agccgggaga ggggcaagtg ggggcagtgc agaaggggca 002640 002641 cagggcgtct tcctgggggg aggaaacttc cctgaattag ctagaggtga tggctgccca ccctggtgaa gatgctaaaa 002720 002721 cactaagctg taccctttaa agtggtgaac ttcatggcat gtgacttata tctcaataaa attgttaAAA ACAGTAATCg 002800 002801 gccgggcgca gtggctcacg cctgtaatcc cagcactttg ggaggccaag gggggcggac cgcgaggtca ggagttcgag 002880 002881 accagcctgg ccaacatggt gaagccccgt atctactaaa aatacaaaaa ttaaccagac atggtggcag gcgcctgtaa 002960 002961 tcccagctac tagggaagct gaggcaggag aattgcttga aaccagaagg cggaacttgc agtgagccga gatggcgcca 003040 003041 ctgcacATAT GTCTGTGCAT ATGTGTAGAT GTGTGTGTGT GGGCGGGGTC GCCCCCTCCA GATGCTCCAG GGGAGGGTCC 003120 003121 TTCCTGCCTC TTCCGGCtac tggtggccct aggccttcct gggcctgtgg ctgcgcagcc ccaacctctg cctgcatcgt 003200 003201 cacatagtcg tgtgcgtgtg tgtgtacgtg tctatgtgtg tgtatgcatg tgtgtctgtg catatgtgta gatgtgtgtg 003280 003281 tcttggtatg tatatgtgtg tctgtgtgtg tctgtcttgg taggtatatg tgtgtgtgca tgttcagttg cgtgtgttgg 003360 003361 tgtgtgcata tgtgcataga ggtaggtgtg tatcggtttg tgtgtgcatg tgtgtctgca tatgtgtagg cacgtgtgtc 003440 003441 ggtgttggta tgtgtacatg tgtgtgcatg tgtgtgtgtt ggtgtgtctg catgtgtatg tgcatatgtg taggtgtgtt 003520 003521 ggcatgtgtg tgcatgtgtg ttggtgtgta tgtgtgtgca tatgtgtagg tgtgtgttgg tttgtgtgtc tgcatatgtg 003600 003601 taggcatgtg tgtgttggtg tggatgtgtg tgcatatgtg gtgtgtgtgc atgtgtaggt gtgtgtgcat gtgtctttgc 003680 003681 atatgtgtag gtgtgttggt atgtgtgcat gtatgtgtac acaggtgtgt gtgcatgtct gtgcatatcc ataggtgtgt 003760 003761 ctgtgtgtgt tggtatatgt gtgtctgtgt tggtatgtag gggtgtgtgc atgtgtgtgc atatgtgtag gtgcgtgtgt 003840 003841 gtctgtgcgt gtgtgtgtgt ccgtcctctc ctctcgttat caggccccag tcattgcatt aggaccccct gctccagtct 003920 003921 ggcctcctct tgatcacagc tgcaaggacc ctacttccaa ctgaggtccc aattcacagg tatcagggtc aggacttgaa 004000 004001 catattttgg ggggacacaa ttcaacccCC GATGGGAGTG CAGGGCATGG GAGGGAGGAG GGAGGCAAAG TGGGGAACAT 004080 004081 GCAGCTGTCA GGACAAGGTC AGCACCTTCC CAAATTCTTC CTGCAGATGT CTGAATCCCA ATTAGCCAGT TATAATAGCG 004160 004161 TTTCTGCAAG TGTAGCTGCC GGGACTCAGC ACCCAAATCT GCCTGCTGGG CACCACAGTA GGCACTGCAG AGCCCCAAGG 004240 004241 ATGCCCCTGC CTGGCTGGGC CTCACCCTGC AGTGGGCACC CCCCCATTCT GCCACATGCC CCTCCACCAT CTTGGCCCTC 004320 004321 TTAGAGGCAT CTCTAGGGTG CTTGGGCCCC TCCAGCCCCA GCCCCAGCCC TGTACCCACA GGCACCCAGG AGGTAACAGA 004400 004401 GCTGGGTGCT CTTCCAGGCT GAGGCAGCAG GGCCCTCAGG CAGGAGGGGC AGCTGGTGCC TCTTAGCCTC CAGCCCTGGC 004480 004481 CTCCCCCTTG CCCCGCAGTT GTTTCAGGCA GGAAGGTGGG CAGTGCCAAC CCTGCGGGGG TCAGTGAGAC CTGAACCTCC 004560 004561 CCAAGGGGGC AGTGCCTGTC TAGTGCGGGG ACAAGGGGCA TAATACTGTC ATCCAGAGCT ATGAAGTGGT CCTTGTGGCC 004640 004641 CTTCCAGGCC GGCGTAGCCC ATAGTCGGGG CCAGTGACCT GGGGGCAGGG CTGGAGGCCA GGAGGGGCGG CTCTGAACAG 004720 004721 AAATGAAGCC GAAAGGGCCG CCCAGGGGAC AGGCCATCTG TCAGCTCAGG GCAGGTGCTG GTTCCGGGAG CTTTGGAGAA 004800 004801 CACTGCATCT GCCAGCCCGC CCTCCAGCCC AGAGATCCCA CGCCAGGCTC CCCAGGCCTT GTGGCCCAGG CGGGCCAGGG 004880 004881 GCAGGTCCCC AGCCTGAGCT GCTCACACTG CAGATGCTTC CAGACGCTGG TTTCTTTGGG TCTCGTTTTA TTAAAAGCAT 004960 004961 GATTTCCCAC TCCACATAtt tccttttttt tgagatggag tctcactctg ttacctaggc tggagtgcag tg |
Predicted Small Protein
Name | NONHSAT056447_smProtein_11:298 |
Length | 96 |
Molecular weight | 10193.5803 |
Aromaticity | 0.0631578947368 |
Instability index | 60.1410526316 |
Isoelectric point | 11.5889282227 |
Runs | 11 |
Runs residual | 0.0132615002072 |
Runs probability | 0.0207721090074 |
Amino acid sequence | MVSREWVRRERRGGGGGTPRWKGSGRQVGEPGSTPRAGLGAQGPSPHLQVSRRLAAAPPP HALWVAPVLVEWGWLALHTGLLLYRAATAMKEEPG |
Secondary structure | LLLHHHHHHLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLLLHHHHHHHHHHLLLLL LEEEELLHHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo ooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii |